Factsheet for PGSC0003DMT400064752

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067020.1.1	Tomato	nucleus	50.93	63.67
VIT_14s0108g01220.t01	Wine grape	nucleus	38.67	46.77
PGSC0003DMT400003403	Potato	nucleus	48.0	42.25
KRG93579	Soybean	nucleus	40.8	36.52
KRH01227	Soybean	nucleus	39.73	36.08
KRH18447	Soybean	nucleus	39.2	35.68
GSMUA_Achr4P28070_001	Banana	nucleus	33.33	33.6
PGSC0003DMT400063264	Potato	nucleus	14.13	29.94
PGSC0003DMT400021535	Potato	nucleus	21.33	29.74
PGSC0003DMT400060936	Potato	nucleus	21.6	29.35
PGSC0003DMT400043930	Potato	nucleus	16.27	21.63
PGSC0003DMT400014324	Potato	nucleus	17.6	20.12

Protein Annotations

EntrezGene:107058095	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1CCV0	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400025151	PGSC:PGSC0003DMG400025151	EnsemblPlants:PGSC0003DMT400064752
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF41	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000296786B	RefSeq:XP_015158904.1	SEG:seg	:	:	:

Description

WIN1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025151]

Coordinates

chr2:+:25411538..25412823

Molecular Weight (calculated)

42019.9 Da

IEP (calculated)

4.531

GRAVY (calculated)

-0.569

Length

375 amino acids

Sequence
(BLAST)

001: MARKRKAEGL TKIHDAAAIL NGARKKFVGV RQRPSGRWVA EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT NFWPSSSPST SALPPKITKL
101: LLRRLRERNK SVAAAANDDD SSSSTSLAAI GHQQQKQQEK IGNTVADFSD LSYTDYLNYP EDNVTDNNNA IANVSAITRE LTSIVQYGYN QEFNFQPVNN
201: YESLSAEIIE IGEAINTDVE DIIESNIDFQ FLNEIGSCNY SPFDLAEELS MVETMEQGMD FGEETSMVSE AMKRMNYERK FSASLYAFNG ITECLKLKMK
301: SGGLTRSDQL SRLQNACKRN LDKERENEKC NVGMTENKDE ENSSEEVAFS SMESAYDSEF SLWSSIDLPP LCFVS

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.