Factsheet for PGSC0003DMT400063264

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114440.1.1	Tomato	plastid	85.31	84.36
KRH56725	Soybean	nucleus	45.76	39.71
KRH03847	Soybean	nucleus	45.76	32.27
VIT_17s0000g04480.t01	Wine grape	nucleus	36.72	28.38
PGSC0003DMT400043930	Potato	nucleus	32.2	20.21
PGSC0003DMT400021535	Potato	nucleus	27.12	17.84
PGSC0003DMT400060936	Potato	nucleus	27.12	17.39
PGSC0003DMT400014324	Potato	nucleus	31.07	16.77
PGSC0003DMT400064752	Potato	nucleus	29.94	14.13
PGSC0003DMT400003403	Potato	nucleus	26.55	11.03

Protein Annotations

EntrezGene:102599677	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M1CAC8	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400024606	PGSC:PGSC0003DMG400024606
EnsemblPlants:PGSC0003DMT400063264	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF1
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002968379	RefSeq:XP_006345066.1	SEG:seg	:

Description

ERF transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024606]

Coordinates

chr3:-:54433650..54434364

Molecular Weight (calculated)

20162.8 Da

IEP (calculated)

9.759

GRAVY (calculated)

-0.884

Length

177 amino acids

Sequence
(BLAST)

001: MENSKSSSES LNNSSKNIQQ NKPISSNDGK KFIGVRQRPS GRWVAEIKET SQKLRLWLGT FDKAEEAALA YDSAARLLRG RNAKTNFKNQ GILKPNEENC
101: SLLEKNPRLY QLMKHAIMKK LAGKYQNNER LETEEELVQE SINKEEICEI QLQGSSKVYS SVIVAPSFSN NEKSYQF

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.