Factsheet for PGSC0003DMT400021535

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078610.1.1	Tomato	nucleus	89.59	82.82
VIT_08s0007g07250.t01	Wine grape	plastid	44.24	45.77
PGSC0003DMT400060936	Potato	nucleus	46.1	44.93
KRG94843	Soybean	nucleus, plastid	44.98	44.0
KRH06691	Soybean	nucleus, plastid	44.61	42.11
KRH70168	Soybean	nucleus	43.12	35.91
KRH08506	Soybean	nucleus	44.24	35.42
PGSC0003DMT400063264	Potato	nucleus	17.84	27.12
PGSC0003DMT400064752	Potato	nucleus	29.74	21.33
PGSC0003DMT400003403	Potato	nucleus	28.25	17.84
PGSC0003DMT400043930	Potato	nucleus	18.22	17.38
PGSC0003DMT400014324	Potato	nucleus	20.82	17.07

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1AF96	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400008352	PGSC:PGSC0003DMG400008352	EnsemblPlants:PGSC0003DMT400021535	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF20	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002962E6E
SEG:seg	:	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400008352]

Coordinates

chr10:+:59114677..59115486

Molecular Weight (calculated)

30459.8 Da

IEP (calculated)

6.975

GRAVY (calculated)

-0.650

Length

269 amino acids

Sequence
(BLAST)

001: MKKVTKSIKG RKRSNNSNSN KFVGVRQRSS GKWIAEIKDT THKKIRMWLG TFETAEDAAR AYDQAACLLR GSNTRTNFVT TRVSADSQLA YRIRNLIDSK
101: KIAKQNKQGN SVFGSTCSEK IQESHEKVLK LCDDNNLYKP TTIATTMTQS QTSCDRQYES SLTTCHHLNS SDADNNDFYK PDMMSCSSSC TSQPQVSWGF
201: EFAEELLDFP IMDESISEMG CTEFERMKVE RQISASLYAV NGVQEYMENV HDIDDLSLWD LPPLCSLLS

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.