CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06691	Soybean	nucleus, plastid	77.45	74.74
VIT_08s0007g07250.t01	Wine grape	plastid	56.0	59.23
PGSC0003DMT400021535	Potato	nucleus	44.0	44.98
Solyc10g080650.1.1	Tomato	nucleus	39.64	43.78
KRH70168	Soybean	nucleus	51.27	43.65
PGSC0003DMT400060936	Potato	nucleus	43.64	43.48
KRH08506	Soybean	nucleus	53.09	43.45
Solyc10g078610.1.1	Tomato	nucleus	44.0	41.58
KRH58943	Soybean	nucleus	30.91	34.14
KRH56725	Soybean	nucleus	21.82	29.41
KRG89549	Soybean	nucleus	26.55	21.86
KRG93579	Soybean	nucleus	33.09	21.72
KRH01227	Soybean	nucleus	32.0	21.31
KRH18447	Soybean	nucleus	31.27	20.87
KRH03847	Soybean	nucleus	18.55	20.32
KRH42840	Soybean	plastid	10.91	20.0
KRH65161	Soybean	plastid	21.09	17.01
KRH48263	Soybean	plastid	20.0	16.52
KRH11052	Soybean	nucleus	20.73	15.75

Protein Annotations

EntrezGene:100796898	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02012046	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_19G113100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1N899	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRG94843	ProteinID:KRG94843
ProteinID:KRG94843.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF20
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001B32397	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:36741925..36742752

Molecular Weight (calculated)

30623.4 Da

IEP (calculated)

5.436

GRAVY (calculated)

-0.701

Length

275 amino acids

Sequence
(BLAST)

001: MEIQFQQPNL QHQKSGIAIT KGGKFKGRSR NNNTNKFVGV RQRPSGRWVA EIKDTTQKIR MWLGTFETAE EAARAYDEAA CLLRGSNTRT NFITHVSLDS
101: PLASRIRNLL NNRKGIKKEE DANANANNAP APRVSTTSSA TSTGTSSNSS NGNDNNDQSL STVTTQSSNL FDDAYKPDLS NCREEFESGH QSNTSWCFGP
201: VFDRFPMAQI FDIPKIDDGL TNAADLDLSE FERMKVERQI SASLYAINGV QEYMETVQDS NETLWDLPPL CSLFC

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.