CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g03170.t01	Wine grape	nucleus	31.22	35.99
PGSC0003DMT400014324	Potato	nucleus	24.86	27.44
Solyc03g119800.1.1	Tomato	nucleus	25.41	27.06
KRH56725	Soybean	nucleus	14.92	26.47
KRH03847	Soybean	nucleus	16.02	23.11
KRH58943	Soybean	nucleus	15.47	22.49
KRH06691	Soybean	nucleus, plastid	17.13	21.75
KRH48263	Soybean	plastid	19.89	21.62
KRH65161	Soybean	plastid	20.17	21.41
KRG94843	Soybean	nucleus, plastid	15.75	20.73
KRH70168	Soybean	nucleus	16.85	18.89
KRG89549	Soybean	nucleus	16.57	17.96
KRH01227	Soybean	nucleus	19.34	16.95
KRH08506	Soybean	nucleus	14.92	16.07
KRH18447	Soybean	nucleus	17.68	15.53
KRG93579	Soybean	nucleus	17.96	15.51
KRH42840	Soybean	plastid	3.59	8.67

Protein Annotations

EntrezGene:102661478	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02009174	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_15G085400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1MEV2	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH11052	ProteinID:KRH11052
ProteinID:KRH11052.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF1
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00023D26CB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:6547453..6548897

Molecular Weight (calculated)

39134.9 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.449

Length

362 amino acids

Sequence
(BLAST)

001: MSKKQNMGAV SDGNRSRKKS SSRGHHRFVG VRQRPSGRWV AEIKDSLQKV RLWLGTFDTA EDAARAYDNA ARALRGANAR TNFELPESSS GGATKRGGSK
101: FVPDCTEPFS FEDVNEPGSE AEGLLGALKA KLLDGKKGKF QFQFLGNCSA PVVQSGMVSR STQNCSGKKE LLLPSSANNT VLSRMNGTGT CSPVHGLMST
201: LASSNTCAKT VVIPNHDHEL VAVASTSSGR VYSHQLCQTP PVTTWPNEVA YDLPWPTQYM SQVPDNSLLA SSGAVATLST WPLSGVTEST VDMTYMDQGQ
301: SNSNKSGQMM NMVSMQLPLV GGANEGLWTL EQQQFVQCDQ NNSWFSFNGS WDPLLYVPSE LT

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.