CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48263	Soybean	plastid	54.25	55.56
TraesCS1A01G434500.1	Wheat	nucleus	12.9	53.66
GSMUA_Achr3P12350_001	Banana	mitochondrion	17.89	47.29
Zm00001d021214_P001	Maize	plastid	25.22	39.45
TraesCS5D01G319200.1	Wheat	plastid	24.05	36.28
TraesCS5B01G313300.1	Wheat	plastid	23.75	35.84
TraesCS5A01G312400.1	Wheat	plastid	23.17	35.11
PGSC0003DMT400043930	Potato	nucleus	28.74	34.75
EER97067	Sorghum	plastid	24.63	34.57
KRH56725	Soybean	nucleus	16.42	27.45
Solyc01g091760.2.1	Tomato	nucleus	22.87	26.8
TraesCS1B01G281500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	12.02	22.53
KRH03847	Soybean	nucleus	16.42	22.31
KRH58943	Soybean	nucleus	16.13	22.09
KRG94843	Soybean	nucleus, plastid	17.01	21.09
KRH11052	Soybean	nucleus	21.41	20.17
KRH06691	Soybean	nucleus, plastid	16.13	19.3
KRG89549	Soybean	nucleus	18.18	18.56
KRH70168	Soybean	nucleus	15.84	16.72
KRH01227	Soybean	nucleus	20.23	16.71
KRG93579	Soybean	nucleus	20.53	16.71
KRH08506	Soybean	nucleus	15.84	16.07
KRH18447	Soybean	nucleus	19.35	16.02
KRH42840	Soybean	plastid	3.52	8.0

Protein Annotations

EntrezGene:100810022	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02001315	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_03G017300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K7KC89	EnsemblPlants:KRH65161
ProteinID:KRH65161	ProteinID:KRH65161.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194
PANTHER:PTHR31194:SF7	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002339627	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:1744329..1745354

Molecular Weight (calculated)

36847.3 Da

IEP (calculated)

8.181

GRAVY (calculated)

-0.669

Length

341 amino acids

Sequence
(BLAST)

001: MAGAEATKYA SSATSPTITA SNNSMATKSN KPISVRRFIG VRQRPSGRWV AEIKDSSQHV RLWLGTYDTP EEAARAYDEA ARALRGENAR TNFAPVSQLV
101: NGQLGQQSGF NNNNNLLSTG SDIGKHGLSF ASLKAKLSKN LQNIMARASD HNNNNNNKSS KSRVSDHFTF ASIFHRRSYQ IPEGDMMKNI EKVVQPSIIV
201: PPMEQSGGDY NSCVANWESA SSVSDCSSEW VGFGNNNSKL GLESDGSEIG EASVGDQGFL EQLMGWVESP DVSDEGSRSK RFKVSSSVLV PPTFTGSPYD
301: CGSPYTGYAS PYNSGYASPY NNNGCASPCN GYASPYYNNK K

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.