CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08506	Soybean	nucleus	58.82	56.55
KRG94843	Soybean	nucleus, plastid	43.65	51.27
VIT_08s0007g07250.t01	Wine grape	plastid	41.18	51.15
KRH06691	Soybean	nucleus, plastid	44.89	50.88
PGSC0003DMT400021535	Potato	nucleus	35.91	43.12
PGSC0003DMT400060936	Potato	nucleus	36.22	42.39
Solyc10g080650.1.1	Tomato	nucleus	32.2	41.77
Solyc10g078610.1.1	Tomato	nucleus	37.46	41.58
KRH58943	Soybean	nucleus	25.7	33.33
KRH56725	Soybean	nucleus	15.79	25.0
KRG89549	Soybean	nucleus	24.46	23.65
KRH01227	Soybean	nucleus	26.93	21.07
KRH42840	Soybean	plastid	9.29	20.0
KRG93579	Soybean	nucleus	25.7	19.81
KRH18447	Soybean	nucleus	25.08	19.66
KRH03847	Soybean	nucleus	13.93	17.93
KRH11052	Soybean	nucleus	18.89	16.85
KRH65161	Soybean	plastid	16.72	15.84
KRH48263	Soybean	plastid	16.1	15.62

Protein Annotations

EntrezGene:100527497	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02000753	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_02G072800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1JD63	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH70168	ProteinID:KRH70168
ProteinID:KRH70168.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF20
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00023BEC3B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:6373389..6375010

Molecular Weight (calculated)

36381.1 Da

IEP (calculated)

8.038

GRAVY (calculated)

-0.865

Length

323 amino acids

Sequence
(BLAST)

001: MEIQFQHPKK HLRASTSKGG KGRNNNNKTK SKYVGVRQRA SGKWVAEIKD TTQKIRMWLG TYETAEEAAR AYDEAACLLR GSNTRTNFIT RVSLDSPLAS
101: RIQNLVNNRK GTKTKQEQYV VETCDTRIKS NRHESIALPE GASPPQRGEL RSESSLEDVS KFSIQQLYID QDCLRKKIRV GNEKKRRVNS TTCSTSNSTN
201: SSNNSDSCEN SLSSETTTQN TQQFDDDAYR PDLSNFMVSE SGSHQNNPSW GFEPSFSQVM DVANLPDIAG LELPDFERIK VERQISASLY AINGVQEYMD
301: TLQDSNNNNG AIWDFPPFCS FLC

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.