CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G19790.1	Thale cress	nucleus	35.34	34.78
CDY35855	Canola	nucleus	35.34	34.51
Bra006518.1-P	Field mustard	nucleus	34.54	34.26
VIT_06s0004g00490.t01	Wine grape	nucleus	36.95	34.07
Bra002262.1-P	Field mustard	nucleus	34.54	33.86
CDX70891	Canola	nucleus	34.54	33.86
CDX88874	Canola	nucleus	34.14	33.6
Bra020063.1-P	Field mustard	nucleus	33.73	33.47
CDY44943	Canola	nucleus	33.73	33.47
CDX92500	Canola	nucleus	34.14	33.46
CDY42296	Canola	nucleus	33.73	33.2
Solyc01g005630.1.1	Tomato	nucleus	30.92	32.91
KRG94843	Soybean	nucleus, plastid	34.14	30.91
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	32.53	30.68
KRH06691	Soybean	nucleus, plastid	34.14	29.82
KRH08506	Soybean	nucleus	35.74	26.49
KRH70168	Soybean	nucleus	33.33	25.7
KRH56725	Soybean	nucleus	18.88	23.04
KRH42840	Soybean	plastid	13.65	22.67
KRH03847	Soybean	nucleus	20.88	20.72
KRH01227	Soybean	nucleus	31.33	18.89
KRG93579	Soybean	nucleus	29.32	17.42
KRH18447	Soybean	nucleus	28.51	17.23
KRG89549	Soybean	nucleus	22.89	17.07
KRH65161	Soybean	plastid	22.09	16.13
KRH48263	Soybean	plastid	21.29	15.92
KRH11052	Soybean	nucleus	22.49	15.47

Protein Annotations

EntrezGene:100803832	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02003294	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_05G157400	GO:GO:0000302	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009723	GO:GO:0009791
GO:GO:0009987	GO:GO:0035865	GO:GO:0043565	GO:GO:0048528	InterPro:IPR001471	InterPro:IPR036955
UniProt:K7KQG6	EnsemblPlants:KRH58943	ProteinID:KRH58943	ProteinID:KRH58943.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF5	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002339F48
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:34980663..34981412

Molecular Weight (calculated)

28032.9 Da

IEP (calculated)

8.189

GRAVY (calculated)

-0.627

Length

249 amino acids

Sequence
(BLAST)

001: MEYQNQRAKE GRFCEKLKIK NRPKFVGVRQ RASGKWAAEI KDTSKKIRLW LGTYQTAEEA ARAYDEAACL LRGSNTRTNF STQGCGVATN SPISLKLRNL
101: LDRKAMSNQS QSQIQRQSSM ISSTFQGADT SASPNVSAIN KIMVMENYSA CSSEGKSLFL VQNHQVCDNP YGLDMNMINC STGITPNTSQ FDYSWPLAQQ
201: RINELPISKD DFGLNAERQL SGYATNECHE EDTYAYDVNY PLSHFFCFT

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.