Factsheet for Bra002262.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92500	Canola	nucleus	98.03	98.03
AT5G19790.1	Thale cress	nucleus	84.25	84.58
Bra020063.1-P	Field mustard	nucleus	79.53	80.48
Bra006518.1-P	Field mustard	nucleus	68.9	69.72
Solyc01g005630.1.1	Tomato	nucleus	38.19	41.45
VIT_06s0004g00490.t01	Wine grape	nucleus	42.13	39.63
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	39.37	37.88
KRH58943	Soybean	nucleus	33.86	34.54

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra002262
EnsemblPlants:Bra002262.1	EnsemblPlants:Bra002262.1-P	ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CDI1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF5	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002544FA8	SEG:seg	:	:	:	:

Description

AT5G19790 (E=4e-091) RAP2.11 | RAP2.11 (related to AP2 11); DNA binding / transcription factor

Coordinates

chrA10:+:10612337..10613101

Molecular Weight (calculated)

28505.3 Da

IEP (calculated)

9.047

GRAVY (calculated)

-0.782

Length

254 amino acids

Sequence
(BLAST)

001: MENKTTQKQK TKEKSKSNNK TKFVGVRQRP SGKWVAEIKD TTQKIRMWLG TFETAEEAAR AYDEAACLLR GSNTRTNFAN HFPNNSQLSL KIRNLLHQKQ
101: TMKQQQQKPK QNKPVSSFAE CSINYTSNAT TLTSTTTTTT VLPLNNVYRP DSSVISHPEA DSVQLPYTWP LVSGFNHHVP LAQGGEEPHG HLNNQNSTGQ
201: HLGLADIERQ ISASLYAMNG ANGYYDNMNT EYAIFDPTDP IWDLPSLSQL FCPT

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.