Factsheet for Bra020063.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44943	Canola	nucleus	100.0	100.0
AT5G19790.1	Thale cress	nucleus	80.48	79.84
Bra002262.1-P	Field mustard	nucleus	80.48	79.53
Bra006518.1-P	Field mustard	nucleus	68.53	68.53
Solyc01g005630.1.1	Tomato	nucleus	37.85	40.6
VIT_06s0004g00490.t01	Wine grape	nucleus	43.03	40.0
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	37.85	35.98
KRH58943	Soybean	nucleus	33.47	33.73

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra020063
EnsemblPlants:Bra020063.1	EnsemblPlants:Bra020063.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DU70	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF5	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00025432E9
SEG:seg	:	:	:	:	:

Description

AT5G19790 (E=3e-085) RAP2.11 | RAP2.11 (related to AP2 11); DNA binding / transcription factor

Coordinates

chrA02:-:4876661..4877416

Molecular Weight (calculated)

28406.3 Da

IEP (calculated)

8.305

GRAVY (calculated)

-0.794

Length

251 amino acids

Sequence
(BLAST)

001: MEQKTTQKKK TKEKSKDNNK KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFETAEEAA RAYDEAACLL RGSNTRTNFA NHFPNNSPLS LKIRNLLYQK
101: QSMKQQQKQQ NKHISSIAEC NINYTSPATS PTASTTTTMM PLNDVYRPDS TIISQPETES IHLPYSCPFV SGFNHQVPMT HGGEETQGHL NNQYSTDQHL
201: GLADIEREIS ASLYAMNGAT YYNNTNAEYA IFDPTDPIWD LPSLSQLFCP I

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.