Factsheet for VIT_06s0004g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005630.1.1	Tomato	nucleus	42.22	48.72
VIT_08s0007g07250.t01	Wine grape	plastid	45.93	47.69
Bra006518.1-P	Field mustard	nucleus	41.48	44.62
CDX70891	Canola	nucleus	41.48	44.09
AT5G19790.1	Thale cress	nucleus	40.74	43.48
CDY42296	Canola	nucleus	40.74	43.48
Bra020063.1-P	Field mustard	nucleus	40.0	43.03
CDY44943	Canola	nucleus	40.0	43.03
CDX88874	Canola	nucleus	40.0	42.69
CDY35855	Canola	nucleus	40.0	42.35
Bra002262.1-P	Field mustard	nucleus	39.63	42.13
CDX92500	Canola	nucleus	39.63	42.13
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	40.74	41.67
KRH58943	Soybean	nucleus	34.07	36.95
VIT_14s0108g01220.t01	Wine grape	nucleus	30.0	26.13
VIT_17s0000g04480.t01	Wine grape	nucleus	18.15	21.4
VIT_02s0025g03170.t01	Wine grape	nucleus	19.63	16.88

Protein Annotations

EntrezGene:100245016	wikigene:100245016	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CBI16533	ProteinID:CBI16533.3	UniProt:D7SLK5	InterPro:DNA-bd_dom_sf	EMBL:FN594951
GO:GO:0000302	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009723	GO:GO:0009791	GO:GO:0009987	GO:GO:0035865	GO:GO:0043565
GO:GO:0048528	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100245016	wikigene:LOC100245016	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF5	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00015C7EFF	ArrayExpress:VIT_06s0004g00490	EnsemblPlantsGene:VIT_06s0004g00490	EnsemblPlants:VIT_06s0004g00490.t01	RefSeq:XP_002283627	RefSeq:XP_002283627.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:672384..673196

Molecular Weight (calculated)

30031.2 Da

IEP (calculated)

8.143

GRAVY (calculated)

-0.594

Length

270 amino acids

Sequence
(BLAST)

001: MELYFQNHPN GVSSPCKQTK VRERTATNKC SKSGKFVGVR QRPSGKWVAE IKNTTQKIRM WLGTFNTAEE AARAYDEAAC LLRGSNTRTN FATHAPTNSP
101: LSLKIRNLLH RKKSLKQNHP PPPAALTTIP TEMSTGASST SGNSHSINAS HASNVVKQDI QMFDDAYRPD LSNCIGELRL GSSQFDPSWV FPAGSDWLQS
201: TQDGFEFPKH AELLSRATDL DMTEFGLMKV ERHLSASFNA MNGVNEYMEN VYDSNDAFWD PSLCQLFCTG

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.