Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002262.1-P | Field mustard | nucleus | 84.58 | 84.25 |
| CDY35855 | Canola | nucleus | 84.19 | 83.53 |
| CDX92500 | Canola | nucleus | 83.4 | 83.07 |
| CDY42296 | Canola | nucleus | 80.63 | 80.63 |
| Bra020063.1-P | Field mustard | nucleus | 79.84 | 80.48 |
| CDY44943 | Canola | nucleus | 79.84 | 80.48 |
| CDX88874 | Canola | nucleus | 73.91 | 73.91 |
| CDX70891 | Canola | nucleus | 70.36 | 70.08 |
| Bra006518.1-P | Field mustard | nucleus | 68.77 | 69.32 |
| Solyc01g005630.1.1 | Tomato | nucleus | 38.34 | 41.45 |
| VIT_06s0004g00490.t01 | Wine grape | nucleus | 43.48 | 40.74 |
| GSMUA_Achr4P28640_001 | Banana | nucleus, plastid | 39.13 | 37.5 |
| KRH58943 | Soybean | nucleus | 34.78 | 35.34 |
Protein Annotations
| MapMan:15.5.7.1 | MapMan:26.9.1.7 | Gene3D:3.30.730.10 | EntrezGene:832099 | ProteinID:AED92749.1 | EMBL:AF003104 |
| EMBL:AF296838 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ArrayExpress:AT5G19790 | EnsemblPlantsGene:AT5G19790 | RefSeq:AT5G19790 |
| TAIR:AT5G19790 | RefSeq:AT5G19790-TAIR-G | EnsemblPlants:AT5G19790.1 | TAIR:AT5G19790.1 | EMBL:AY560854 | Unigene:At.71012 |
| ncoils:Coil | InterPro:DNA-bd_dom_sf | GO:GO:0000302 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009723 |
| GO:GO:0009791 | GO:GO:0009873 | GO:GO:0009987 | GO:GO:0035865 | GO:GO:0043565 | GO:GO:0048528 |
| InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_197480.1 | PFAM:PF00847 | PO:PO:0000256 | PO:PO:0000293 |
| PO:PO:0003015 | PO:PO:0005679 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF5 |
| UniProt:Q6J9S1 | Symbol:RAP2.11 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0000162517 | SEG:seg |
Description
RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
Coordinates
chr5:-:6689108..6690040
Molecular Weight (calculated)
28376.2 Da
IEP (calculated)
7.687
GRAVY (calculated)
-0.712
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.