Factsheet for Bra006518.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70891	Canola	nucleus	90.84	89.76
Bra002262.1-P	Field mustard	nucleus	69.72	68.9
AT5G19790.1	Thale cress	nucleus	69.32	68.77
Bra020063.1-P	Field mustard	nucleus	68.53	68.53
Solyc01g005630.1.1	Tomato	nucleus	39.04	41.88
VIT_06s0004g00490.t01	Wine grape	nucleus	44.62	41.48
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	38.65	36.74
KRH58943	Soybean	nucleus	34.26	34.54

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlantsGene:Bra006518	EnsemblPlants:Bra006518.1	EnsemblPlants:Bra006518.1-P	ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CQM9
PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF5
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000253FFB9	SEG:seg	:	:

Description

AT5G19790 (E=3e-079) RAP2.11 | RAP2.11 (related to AP2 11); DNA binding / transcription factor

Coordinates

chrA03:-:3880517..3881272

Molecular Weight (calculated)

28499.4 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.762

Length

251 amino acids

Sequence
(BLAST)

001: MEHHQTTQKQ KIKKKSKGTN KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFETAEEAA RAYDEAACLL RGSNTRTNFA NHFPNNSQLS LKIRNLLHQK
101: QSLKHQQQNK PASSFLEHNI NYTSPATCPT ANPTTTLMPF SNVYHPDLPA ILQPEADSIQ LPYSWPLVSE LNHQVPLAKY RVEEAHGHLN DHNSTDQHSG
201: LADIERQISA SLYAMNGATT HYDNMHSEYP IFDPTDPIWD LPSLSQLFCP T

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.