CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006518.1-P	Field mustard	nucleus	89.76	90.84
CDX88874	Canola	nucleus	80.31	80.63
CDY35855	Canola	nucleus	71.65	71.37
CDX92500	Canola	nucleus	71.26	71.26
AT5G19790.1	Thale cress	nucleus	70.08	70.36
CDY42296	Canola	nucleus	69.29	69.57
CDY44943	Canola	nucleus	68.11	68.92
Solyc01g005630.1.1	Tomato	nucleus	39.76	43.16
VIT_06s0004g00490.t01	Wine grape	nucleus	44.09	41.48
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	37.4	35.98
KRH58943	Soybean	nucleus	33.86	34.54

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	GO:A0A078C1K8	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDX70891	ProteinID:CDX70891	ProteinID:CDX70891.1	ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00140792001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF5
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0004EB97B9	SEG:seg	:	:

Description

BnaC03g09750D

Coordinates

chrLK031791:-:2602867..2603631

Molecular Weight (calculated)

28941.9 Da

IEP (calculated)

8.130

GRAVY (calculated)

-0.774

Length

254 amino acids

Sequence
(BLAST)

001: MEHHQTTQKQ KIKRKSKGTN KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFETAEEAA RAYDEAACLL RGSNTRTNFA NHFPNNSQLS LKIRNLLHQK
101: QSLKHQQQQQ QNKPASSFVE HNINYTLPAT CPTANTTTTL MPLNNVYRPD LSAILQPEAD SVQLPYSWPL VSELNHQVPL ANYRVEEAHG HLNDHNTTDQ
201: HSGLADIERQ ISASLYAMNG ATTYYDNMHS EYPIFDPTDP IWDLPSLSQL FCPT

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.