Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92500 | Canola | nucleus | 95.29 | 95.67 |
| AT5G19790.1 | Thale cress | nucleus | 83.53 | 84.19 |
| CDY44943 | Canola | nucleus | 79.22 | 80.48 |
| CDY42296 | Canola | nucleus | 79.61 | 80.24 |
| CDX88874 | Canola | nucleus | 74.9 | 75.49 |
| CDX70891 | Canola | nucleus | 71.37 | 71.65 |
| Solyc01g005630.1.1 | Tomato | nucleus | 37.65 | 41.03 |
| VIT_06s0004g00490.t01 | Wine grape | nucleus | 42.35 | 40.0 |
| GSMUA_Achr4P28640_001 | Banana | nucleus, plastid | 39.22 | 37.88 |
| KRH58943 | Soybean | nucleus | 34.51 | 35.34 |
Protein Annotations
| MapMan:15.5.7.1 | MapMan:26.9.1.7 | Gene3D:3.30.730.10 | GO:A0A078HBS0 | UniProt:A0A078HBS0 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY35855 | ProteinID:CDY35855 | ProteinID:CDY35855.1 | ncoils:Coil | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00059389001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF5 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EADCFE | SEG:seg | : | : |
Description
BnaC09g37870DBnaC09g37870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBS0]
Coordinates
chrLK032362:+:343070..343837
Molecular Weight (calculated)
28527.3 Da
IEP (calculated)
8.762
GRAVY (calculated)
-0.789
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNKTTQKQK TKEKSKGNKN KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFETAEEAA RAYDEAACLL RGSNTRTNFA NHFPNNSQLS LKIRNLLHQK
101: QTMKQQQQQP KQNKPVSSFA ECGINYTSNA TTLTSTTTTT TVLPLNNVYR PDSSVISHPE ADSVQLPYTW PLVSGFNHQA PLAQGGEEAH GHLNNQNSTD
201: QHLGLADIER QISASLYAMN GANGYYDNMS TEYAIFDPTD PIWDLPSLSQ LFCPT
101: QTMKQQQQQP KQNKPVSSFA ECGINYTSNA TTLTSTTTTT TVLPLNNVYR PDSSVISHPE ADSVQLPYTW PLVSGFNHQA PLAQGGEEAH GHLNNQNSTD
201: QHLGLADIER QISASLYAMN GANGYYDNMS TEYAIFDPTD PIWDLPSLSQ LFCPT
001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
Arabidopsis Description
RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.