Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44943 | Canola | nucleus | 94.86 | 95.62 |
| AT5G19790.1 | Thale cress | nucleus | 80.63 | 80.63 |
| CDX92500 | Canola | nucleus | 80.63 | 80.31 |
| CDY35855 | Canola | nucleus | 80.24 | 79.61 |
| CDX88874 | Canola | nucleus | 74.31 | 74.31 |
| CDX70891 | Canola | nucleus | 69.57 | 69.29 |
| Solyc01g005630.1.1 | Tomato | nucleus | 38.74 | 41.88 |
| VIT_06s0004g00490.t01 | Wine grape | nucleus | 43.48 | 40.74 |
| GSMUA_Achr4P28640_001 | Banana | nucleus, plastid | 37.94 | 36.36 |
| KRH58943 | Soybean | nucleus | 33.2 | 33.73 |
Protein Annotations
| MapMan:15.5.7.1 | MapMan:26.9.1.7 | Gene3D:3.30.730.10 | GO:A0A078HX19 | UniProt:A0A078HX19 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY42296 | ProteinID:CDY42296 | ProteinID:CDY42296.1 | ncoils:Coil | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00074536001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF5 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EF45DD | SEG:seg | : | : |
Description
BnaC02g09020DBnaC02g09020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX19]
Coordinates
chrLK032520:-:180311..181072
Molecular Weight (calculated)
28733.7 Da
IEP (calculated)
8.016
GRAVY (calculated)
-0.806
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQKTTQKKK TKEKSKDNNK KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFETAEEAA RAYDEAACLL RGSNTRTNFA NHFPNNSQLS LKIRNLLHQK
101: QSMKQQQQKQ QNKHISSIAE CNINYTSPAT SPTASTTTTM MPLNDVYRPD STIISQPETE SIHFPYSCPF VSGFNHQVPM THGGEETHEH LNNPYSADHH
201: LGLADIEREI SASLYAMNGA TTYYNNMNAE YAIFDPTDPI WDLPSLSQLF CPI
101: QSMKQQQQKQ QNKHISSIAE CNINYTSPAT SPTASTTTTM MPLNDVYRPD STIISQPETE SIHFPYSCPF VSGFNHQVPM THGGEETHEH LNNPYSADHH
201: LGLADIEREI SASLYAMNGA TTYYNNMNAE YAIFDPTDPI WDLPSLSQLF CPI
001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
Arabidopsis Description
RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.