Factsheet for Solyc01g005630.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00490.t01	Wine grape	nucleus	48.72	42.22
CDX70891	Canola	nucleus	43.16	39.76
Bra006518.1-P	Field mustard	nucleus	41.88	39.04
CDY42296	Canola	nucleus	41.88	38.74
AT5G19790.1	Thale cress	nucleus	41.45	38.34
CDX88874	Canola	nucleus	41.45	38.34
Bra002262.1-P	Field mustard	nucleus	41.45	38.19
CDX92500	Canola	nucleus	41.45	38.19
CDY44943	Canola	nucleus	40.6	37.85
Bra020063.1-P	Field mustard	nucleus	40.6	37.85
CDY35855	Canola	nucleus	41.03	37.65
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	42.31	37.5
Solyc10g080650.1.1	Tomato	nucleus	38.89	36.55
Solyc10g078610.1.1	Tomato	nucleus	39.32	31.62
KRH58943	Soybean	nucleus	32.91	30.92
Solyc03g114440.1.1	Tomato	plastid	22.22	29.05
Solyc02g067020.1.1	Tomato	nucleus	36.32	28.33
Solyc01g091760.2.1	Tomato	nucleus	24.36	19.59
Solyc03g119800.1.1	Tomato	nucleus	22.22	15.29
Solyc02g088310.1.1	Tomato	nucleus	22.65	14.89

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0000302	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009723	GO:GO:0009791	GO:GO:0009987	GO:GO:0035865
GO:GO:0043565	GO:GO:0048528	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4ASC9	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF5	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc01g005630.1	EnsemblPlants:Solyc01g005630.1.1	UniParc:UPI0002761CD2	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:444880..445584

Molecular Weight (calculated)

27064.2 Da

IEP (calculated)

6.167

GRAVY (calculated)

-0.910

Length

234 amino acids

Sequence
(BLAST)

001: MEQQQQQQLQ PKHQKQRKFV GVRQRPSGKW VAEIKNTTQK IRMWLGTFDS AEEAARAYDE AACLLRGSNA RTNFHNHTPV SPALSMKIRN LINHKKSLNK
101: INHKSTSTSS SSIPTSSTIH QQTQISNDDA YKPDLNFYDQ ITCSNFDHTS TFANDFDTIL LDDENVDNFH DVVPKEIIED HTQFENMNVE RQISTSLYAM
201: NGVNEYWDNF HDSSNNNNNN DWDLPMLYQM FCPS

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.