Factsheet for Solyc01g091760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G434500.1	Wheat	nucleus	14.09	50.0
GSMUA_Achr3P12350_001	Banana	mitochondrion	21.99	49.61
Zm00001d021214_P001	Maize	plastid	25.09	33.49
Solyc03g114440.1.1	Tomato	plastid	19.59	31.84
PGSC0003DMT400043930	Potato	nucleus	29.55	30.5
EER97067	Sorghum	plastid	25.43	30.45
TraesCS5B01G313300.1	Wheat	plastid	23.02	29.65
TraesCS5D01G319200.1	Wheat	plastid	22.68	29.2
TraesCS5A01G312400.1	Wheat	plastid	21.99	28.44
Solyc01g005630.1.1	Tomato	nucleus	19.59	24.36
KRH48263	Soybean	plastid	27.84	24.32
KRH65161	Soybean	plastid	26.8	22.87
Solyc10g080650.1.1	Tomato	nucleus	17.53	20.48
Solyc03g119800.1.1	Tomato	nucleus	23.02	19.71
Solyc02g067020.1.1	Tomato	nucleus	20.27	19.67
Solyc10g078610.1.1	Tomato	nucleus	18.9	18.9
TraesCS1B01G281500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	8.93	14.29
Solyc02g088310.1.1	Tomato	nucleus	11.0	8.99

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:K4AZB6	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF7
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc01g091760.2	EnsemblPlants:Solyc01g091760.2.1	UniParc:UPI00027683CF	SEG:seg

Description

No Description!

Coordinates

chr1:-:85341250..85342210

Molecular Weight (calculated)

32395.0 Da

IEP (calculated)

7.729

GRAVY (calculated)

-0.801

Length

291 amino acids

Sequence
(BLAST)

001: MATDLENTKT TITTNTNTTN SSSTEAKKSS ITRKFVGVRQ RPSGRWVAEI KDSSQRVRLW LGTYDTPEEA AHAYDEAARA LRGENARTNF ASTTPNSDMD
101: QSNILHSKNG LSFSSIKAKL SKNLQSIMAR NSENKSSSSK SITRVSDHFT FARIFHFKNN YDQPYQNHRH VDMNKVVQPS IRVLPHDVTD NNNNNDSSWE
201: NSSSVSDCSS EWAAFRQLGL DCDNYGSDGS EYFVGSDPLM AGWMSSPDIM SSTSTNEGSS RSKRFKVSSS VVVPPTFTES PLHDAQNYVP F

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.