CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021214_P001	Maize	plastid	66.26	73.85
TraesCS5A01G312400.1	Wheat	plastid	44.86	48.44
TraesCS5B01G313300.1	Wheat	plastid	44.86	48.23
TraesCS5D01G319200.1	Wheat	plastid	44.86	48.23
GSMUA_Achr3P12350_001	Banana	mitochondrion	23.87	44.96
TraesCS1B01G281500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.34	35.16
KRH48263	Soybean	plastid	36.63	26.73
PGSC0003DMT400043930	Potato	nucleus	30.04	25.89
Solyc01g091760.2.1	Tomato	nucleus	30.45	25.43
KRH65161	Soybean	plastid	34.57	24.63
KXG34641	Sorghum	nucleus	24.28	18.67
EER99585	Sorghum	nucleus	23.87	18.24
OQU79442	Sorghum	nucleus	23.05	13.21
OQU91384	Sorghum	nucleus	23.87	11.09

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EntrezGene:8054872	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
UniProt:C5X629	InterPro:DNA-bd_dom_sf	EnsemblPlants:EER97067	ProteinID:EER97067	ProteinID:EER97067.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF7	SMART:SM00380	EnsemblPlantsGene:SORBI_3002G269600
SUPFAM:SSF54171	UniParc:UPI0001A83916	RefSeq:XP_002460546.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:65329065..65330441

Molecular Weight (calculated)

25402.6 Da

IEP (calculated)

8.680

GRAVY (calculated)

-0.228

Length

243 amino acids

Sequence
(BLAST)

001: MAAAAAAQDS GRTASATMVT VSRRGRRFVG VRQRPSGRWV AEIKDSAQRV RLWLGTFDTA DEAARAYDEA ARALRGENTR TNFADRAARH GHGGPAGAAR
101: ARLSKNLQHV MARAAAAGRA AACAGVGDQF ALAAVFRHCQ QPAAVAAAQA QAQQQAEPEA VQQVVKHAVK PSFVVPRRTE ATPPSLSSSS VPGGGEVWCV
201: DDDVDAAAEL LCAEEGSFKV SSSVIVPPSF SVSSSESFGL DDF

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.