CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030862_P001	Maize	plastid	67.92	69.57
TraesCS5D01G083500.1	Wheat	nucleus, plastid	47.17	48.08
HORVU5Hr1G018720.1	Barley	nucleus	47.17	47.96
TraesCS5B01G077300.1	Wheat	nucleus	46.23	47.12
TraesCS5A01G071300.1	Wheat	nucleus, plastid	46.23	47.0
Os12t0582900-01	Rice	nucleus	37.5	40.05
OQU91384	Sorghum	nucleus	40.8	33.08
EER99585	Sorghum	nucleus	19.81	26.42
KXG34641	Sorghum	nucleus	18.4	24.68
EER97067	Sorghum	plastid	13.21	23.05

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	UniProt:A0A1Z5R6M7	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:OQU79442	ProteinID:OQU79442	ProteinID:OQU79442.1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF1	SMART:SM00380	EnsemblPlantsGene:SORBI_3008G145000
SUPFAM:SSF54171	UniParc:UPI000B426947	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:57646012..57647581

Molecular Weight (calculated)

44504.3 Da

IEP (calculated)

4.260

GRAVY (calculated)

-0.480

Length

424 amino acids

Sequence
(BLAST)

001: MSMARKRKAS DDSAVDVDGN DDVLHSPPPL LASTDACAWA SSGGGGMAAA VAAAAAAAQQ QQQQRGRKRF VGVRQRPSGR WVAEIKDTIQ KIRVWLGTFD
101: TAEEAARAYD EAACLLRGAN TRTNFWPRPS PASSVAVAAA AHPAPPPPTP TPTPAAASVS PTQAPALPSK VTNLLLLRLR ARNNDQQQVL NAAPARQQEA
201: TALLQGPLCA EPYSGGGEEC AFQVDDFLSY DCGSDENSSQ EIDDEEEEEE EEEEEELDFQ FMDQQAASPA AGCEGGGLCS PFEVVAAELG GAVEAGGGEP
301: ATAVHELMMS RMDYERKISA SLYALSGVSE CLRMRLGAAA GGGHAVRDQL SGLREACRKK QRQTVQREQE PSTETAEDVK PSREECSPGG GGGAPEATSS
401: SSSEASDGDG DVLLWSSLDL APIC

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.