Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G083500.1 | Wheat | nucleus, plastid | 85.13 | 85.34 |
| TraesCS5B01G077300.1 | Wheat | nucleus | 84.17 | 84.38 |
| HORVU5Hr1G018720.1 | Barley | nucleus | 82.97 | 82.97 |
| Zm00001d030862_P001 | Maize | plastid | 49.16 | 49.52 |
| Os12t0582900-01 | Rice | nucleus | 46.28 | 48.61 |
| OQU79442 | Sorghum | nucleus | 47.0 | 46.23 |
| TraesCS1A01G434500.1 | Wheat | nucleus | 8.63 | 43.9 |
| TraesCS4A01G236300.1 | Wheat | nucleus | 40.29 | 40.58 |
| TraesCS6A01G390700.1 | Wheat | nucleus | 19.66 | 27.61 |
| TraesCS2A01G185600.1 | Wheat | nucleus | 19.42 | 26.64 |
| TraesCS5A01G312400.1 | Wheat | plastid | 12.71 | 23.56 |
Protein Annotations
| MapMan:15.5.7.1 | MapMan:26.9.1.7 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ncoils:Coil |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 |
| PANTHER:PTHR31194:SF41 | SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS5A01G071300 | EnsemblPlants:TraesCS5A01G071300.1 | TIGR:cd00018 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:80154708..80155961
Molecular Weight (calculated)
45293.4 Da
IEP (calculated)
4.116
GRAVY (calculated)
-0.557
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSMARKRK ASDDVSDTDI DVGIPLSLAS TDAWTTSTVA ATTAARQQQR GRKRFVGVRQ RPSGRWVAEI KDTIQKIRVW LGTFDTAEEA ARAYDEAACL
101: LRGANTRTNF WPRPSPPAAL QPPPPAMLSM QAPALPSKVS NLLLLRLKAR NQQLLLNDAT APQEAALLQQ QMQKQMSSST SSCQESYVHG RDDEYCFQVD
201: DFLSEECNNS PEMEEEEEEV EEEEVEEEEE VEEEEELDFQ FMDKPTVAED EDAGICSPFE MVAAELGGSA PVEANDVDGE PATAVQEAMR RMDYERKVSA
301: SLYALSGVSE CLRMRLGGGA SAARDQLSGL REACRKKQRA AVQQPASEQS SEPAVAAADH DAEEGKASMQ EECSGSSSSG SSLTEAASSS SPEANVTGDG
401: DVLLWSSLDL APICYMA
101: LRGANTRTNF WPRPSPPAAL QPPPPAMLSM QAPALPSKVS NLLLLRLKAR NQQLLLNDAT APQEAALLQQ QMQKQMSSST SSCQESYVHG RDDEYCFQVD
201: DFLSEECNNS PEMEEEEEEV EEEEVEEEEE VEEEEELDFQ FMDKPTVAED EDAGICSPFE MVAAELGGSA PVEANDVDGE PATAVQEAMR RMDYERKVSA
301: SLYALSGVSE CLRMRLGGGA SAARDQLSGL REACRKKQRA AVQQPASEQS SEPAVAAADH DAEEGKASMQ EECSGSSSSG SSLTEAASSS SPEANVTGDG
401: DVLLWSSLDL APICYMA
001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
Arabidopsis Description
RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.