Factsheet for Zm00001d030862_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79442	Sorghum	nucleus	69.57	67.92
TraesCS5A01G071300.1	Wheat	nucleus, plastid	49.52	49.16
HORVU5Hr1G018720.1	Barley	nucleus	49.03	48.68
TraesCS5D01G083500.1	Wheat	nucleus, plastid	48.79	48.56
TraesCS5B01G077300.1	Wheat	nucleus	48.55	48.32
Zm00001d033353_P001	Maize	nucleus	42.51	42.11
Os12t0582900-01	Rice	nucleus	38.16	39.8
Zm00001d021214_P001	Maize	plastid	14.25	27.06
Zm00001d021892_P001	Maize	nucleus	19.81	26.62
Zm00001d006653_P001	Maize	nucleus	19.81	26.37
Zm00001d019116_P001	Maize	nucleus	19.08	24.53

Protein Annotations

EntrezGene:100383396	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EMBL:BT067109	UniProt:C0PFP0	ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	ProteinID:ONM01619.1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF1	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000195CA79	EnsemblPlantsGene:Zm00001d030862	EnsemblPlants:Zm00001d030862_P001	EnsemblPlants:Zm00001d030862_T001	SEG:seg	:

Description

AP2-EREBP-transcription factor 168Ethylene-responsive transcription factor RAP2-11

Coordinates

chr1:+:164035614..164036858

Molecular Weight (calculated)

43937.1 Da

IEP (calculated)

4.370

GRAVY (calculated)

-0.479

Length

414 amino acids

Sequence
(BLAST)

001: MARKRKASDS AAGIDGVHSL PPPLALASTD ACAWASSGGT SMAAVAEAAA AQQQRRGRKR FVGVRQRPSG RWVAEIKDTI QKIRVWLGTF DTAEEAARAY
101: DEAACLLRGA NTRTNFWPRP SPASSVAVAA AAHPAPPPPT PPPLPGLMGS PTQPPALPSK VTNLLLLRLR ARNNQQQLLL NATPARQQEA AAAALLQGPL
201: CAEPYGGGEE CAFQVDDFLS YDCGSDENSS QEIEDEEEEE EEEEEEELDF QFMDQQTASP GAGCEGGLCS PFEVVAAELG GAVEAGGGEP ATAVQELMMS
301: RMDYERKISA SLYALSGVSE CIKMRLGAAA GGHAVRDQLS GLREACRKKQ REIVQQQHEQ EPSMDTAEDV KPPREERSPG DGAPEATSSS SEASHGDSDG
401: DVLLWSSLDL APIC

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.