Factsheet for Zm00001d019116_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34641	Sorghum	nucleus	42.55	43.35
Os07t0204000-00	Rice	nucleus	35.09	42.48
TraesCS6B01G431100.1	Wheat	nucleus	35.09	39.1
TraesCS6A01G390700.1	Wheat	nucleus	35.09	38.05
HORVU6Hr1G090800.1	Barley	nucleus	35.4	35.51
Zm00001d006653_P001	Maize	nucleus	34.16	35.37
Zm00001d021892_P001	Maize	nucleus	33.54	35.06
TraesCS6D01G377000.1	Wheat	nucleus	33.23	32.42
Zm00001d021214_P001	Maize	plastid	17.39	25.69
Zm00001d030862_P001	Maize	plastid	24.53	19.08
Zm00001d033353_P001	Maize	nucleus	24.22	18.66

Protein Annotations

EntrezGene:103633756	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	UniProt:A0A060D6C7	ProteinID:AIB05153.1
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	ProteinID:ONM52289.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF20	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000220CAC0
EnsemblPlantsGene:Zm00001d019116	EnsemblPlants:Zm00001d019116_P001	EnsemblPlants:Zm00001d019116_T001	SEG:seg	:	:

Description

AP2-EREBP-transcription factor 82Ethylene-responsive transcription factor RAP2-11

Coordinates

chr7:+:17758679..17759647

Molecular Weight (calculated)

34368.0 Da

IEP (calculated)

9.642

GRAVY (calculated)

-0.650

Length

322 amino acids

Sequence
(BLAST)

001: MELQFHPQQH HSYQQQQQPP PPATKEPKPK PRTRTKCGGG GGGSSKFVGV RQRPSGRWVA EIKDTTQKVR VWLGTFETAE AAARAYDEAA CLLRGANTRT
101: NFAAAPPPDS PLAARIRGIL DHNNNNGRTP PKKTLPHRPT AARFFPAAAA STASTCSSTA SPTSSSPSSS ISFATSTHAR APIPTLPDPR SQSATEEAYY
201: APYSATGGGE EFQLAATTHQ YEQQSWALNA ASSPLTPPPP PDARDVGSVN ARRLAVAAET GRDRMIKLEK KSSSASLSLS PHGVIDRGPD KDLAFDVGND
301: ASDSLWDLPP ICPLSSCRSM MF

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.