Factsheet for HORVU6Hr1G090800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G390700.1	Wheat	nucleus	61.06	65.99
TraesCS6B01G431100.1	Wheat	nucleus	55.45	61.59
TraesCS6D01G377000.1	Wheat	nucleus	61.06	59.39
Os07t0204000-00	Rice	nucleus	37.07	44.74
KXG34641	Sorghum	nucleus	34.89	35.44
Zm00001d019116_P001	Maize	nucleus	35.51	35.4
HORVU2Hr1G037540.1	Barley	nucleus	31.15	33.22
HORVU4Hr1G013410.1	Barley	nucleus	25.55	21.52
HORVU5Hr1G018720.1	Barley	nucleus	24.3	18.7

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	UniProt:A0A287V5K3	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G090800
EnsemblPlants:HORVU6Hr1G090800.1	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF20	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000B46F07B	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:573617094..573618533

Molecular Weight (calculated)

34352.1 Da

IEP (calculated)

9.153

GRAVY (calculated)

-0.639

Length

321 amino acids

Sequence
(BLAST)

001: GHARHDKPST NSPRRRPPLN PCAASKSSDQ IQRERIGQSM ELQFQQQQQQ QCQYEAAVGK AAAKGRGSKC KFVGVRQRPS GRWVAEIKDT THKIRVWLGT
101: FETAEDAARA YDEAACLLRG SNTRTNFATA APSAAASSPP DSPLASRIRT LLTHKKLKKS ASPPPRASSH SQPPALAIGP ATAASNASAG STSSTISFAM
201: SAGGAAAAHH TPTPLSNHMT YQQWINNGGE HLHQHLEHHP WPATLSAAVP TLAARRNVGD CRVITDGTRP EKQQEDSASP GAAMSGVVQE QDDGFDIGSD
301: PCDSLWDLPP ICQLSCRSLM Y

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.