Factsheet for TraesCS6B01G431100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G390700.1	Wheat	nucleus	70.93	69.02
TraesCS6D01G377000.1	Wheat	nucleus	78.2	68.48
HORVU6Hr1G090800.1	Barley	nucleus	61.59	55.45
Os07t0204000-00	Rice	nucleus	43.6	47.37
KXG34641	Sorghum	nucleus	41.87	38.29
Zm00001d019116_P001	Maize	nucleus	39.1	35.09
TraesCS2B01G221700.1	Wheat	nucleus	36.33	34.2
TraesCS5B01G313300.1	Wheat	plastid	16.95	21.68
TraesCS4B01G078700.1	Wheat	nucleus	26.99	18.93
TraesCS5B01G077300.1	Wheat	nucleus	26.64	18.51
TraesCS1B01G281500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	8.65	13.74

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF20
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6B01G431100	EnsemblPlants:TraesCS6B01G431100.1	TIGR:cd00018	SEG:seg

Description

No Description!

Coordinates

chr6B:-:699017845..699018714

Molecular Weight (calculated)

30646.8 Da

IEP (calculated)

8.304

GRAVY (calculated)

-0.465

Length

289 amino acids

Sequence
(BLAST)

001: MELQFQQQQQ QQCQYEAAVG KAAAAAAAKG RGSSKCKFVG VRQRPSGRWV AEIKDTTHKI RVWLGTFETA EEAARAYDEA ACLLRGSNTR TNFATAAPAA
101: ASSPPDSPLA SRIRTLLTHK KLKKSASPPP PRAPSQQPAV TISLATAASN ASAGNSTSST SSTISFAMSA GGAAAHHTPA PGLSNHMTYH QWINHGGEQL
201: HQHLEHQPWP ATLSPAAPTL AARRNVAECR VIADAARPEK QEDSASPGAA MSGVVQQEQD DGFDIGSDPC DSLWDLPPIC QLSCRSLMY

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.