CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0204000-00	Rice	nucleus	43.04	51.13
Zm00001d019116_P001	Maize	nucleus	43.35	42.55
TraesCS6B01G431100.1	Wheat	nucleus	38.29	41.87
TraesCS6A01G390700.1	Wheat	nucleus	36.71	39.06
EER99585	Sorghum	nucleus	36.08	35.85
HORVU6Hr1G090800.1	Barley	nucleus	35.44	34.89
TraesCS6D01G377000.1	Wheat	nucleus	33.54	32.12
EER97067	Sorghum	plastid	18.67	24.28
OQU79442	Sorghum	nucleus	24.68	18.4
OQU91384	Sorghum	nucleus	25.95	15.68

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	UniProt:A0A1B6Q9T2	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EnsemblPlants:KXG34641	ProteinID:KXG34641	ProteinID:KXG34641.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF20	SMART:SM00380	EnsemblPlantsGene:SORBI_3002G071600	SUPFAM:SSF54171
UniParc:UPI0003C697D0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:7249476..7250737

Molecular Weight (calculated)

33767.3 Da

IEP (calculated)

8.578

GRAVY (calculated)

-0.562

Length

316 amino acids

Sequence
(BLAST)

001: MELHFQQPPQ SHPQQQYSSY QQPPATTKET KPRTRTKCGS GGGGGGGSGS KFVGVRQRPS GRWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG
101: ANTRTNFAAA GAHASPPDSP LAARIRGILN HKRMKKNASQ QHTVNFFPAG AYHRAAGAAA TAASTTSTST ITTTTSSVSP SSSPSSSIVS FAMSSHGVRT
201: PILPAAQSIA EEAYRPYLVS GGGEEFQLAT RQYEQQWALN NTSIPPSDGC DMANENACLV VAEADKVKLE KKSSASHHGG MDRVQDKDVF EAGNDASDSL
301: WDLPPICPLS CRSLMY

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.