CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006653_P001	Maize	nucleus	73.27	74.92
Zm00001d021892_P001	Maize	nucleus	67.3	69.48
TraesCS2A01G185600.1	Wheat	nucleus	58.18	60.86
TraesCS2D01G202100.1	Wheat	nucleus	58.49	60.78
HORVU2Hr1G037540.1	Barley	nucleus	57.23	60.47
TraesCS2B01G221700.1	Wheat	nucleus	55.66	57.65
Os07t0575000-00	Rice	nucleus	61.95	48.28
KXG34641	Sorghum	nucleus	35.85	36.08
EER97067	Sorghum	plastid	18.24	23.87
OQU79442	Sorghum	nucleus	26.42	19.81
OQU91384	Sorghum	nucleus	27.04	16.44

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5XCA9
InterPro:DNA-bd_dom_sf	EnsemblPlants:EER99585	ProteinID:EER99585	ProteinID:EER99585.2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF26	SMART:SM00380
EnsemblPlantsGene:SORBI_3002G350500	SUPFAM:SSF54171	UniParc:UPI00081AEA79	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:71471106..71472684

Molecular Weight (calculated)

34029.3 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.440

Length

318 amino acids

Sequence
(BLAST)

001: MELLHFQAQP PVFQLEDYSS YYYYYQQEAA AQAKPSKPRG RKKGSNNHSK FVGVRQRPSG RWVAEIKDTT QKIRMWLGTF ETAEAAAKAY DEAARLLRGT
101: DARTNFAPRI SPDCPLAVRI RGLLHHKKIK KAKAAAASSS AAAVAAAAKQ QASSSPVPTT SNSNSNSNSN SHSTNSACGG GSSSSSSMSS SSSSCDDAIA
201: MPHGGIGALD AGEVYRPEFA TAGAEEFDSW MFDSAFGQFP ALDSFAAVDD AVPAAGTTEE SVAAATPGDE MAEFERIKVE RRISASLYAM NGLQEYFDRV
301: IDASACDSLW DLSPLCHH

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.