Factsheet for PGSC0003DMT400043930

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G434500.1	Wheat	nucleus	15.25	52.44
GSMUA_Achr3P12350_001	Banana	mitochondrion	21.63	47.29
Zm00001d021214_P001	Maize	plastid	25.18	32.57
PGSC0003DMT400063264	Potato	nucleus	20.21	32.2
TraesCS5B01G313300.1	Wheat	plastid	25.53	31.86
TraesCS5D01G319200.1	Wheat	plastid	25.18	31.42
TraesCS5A01G312400.1	Wheat	plastid	24.82	31.11
KRH48263	Soybean	plastid	36.52	30.93
EER97067	Sorghum	plastid	25.89	30.04
Solyc01g091760.2.1	Tomato	nucleus	30.5	29.55
KRH65161	Soybean	plastid	34.75	28.74
PGSC0003DMT400014324	Potato	nucleus	23.4	20.12
PGSC0003DMT400060936	Potato	nucleus	19.5	19.93
TraesCS1B01G281500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	12.06	18.68
PGSC0003DMT400021535	Potato	nucleus	17.38	18.22
PGSC0003DMT400064752	Potato	nucleus	21.63	16.27
PGSC0003DMT400003403	Potato	nucleus	20.57	13.62

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1BFD0	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400017051	PGSC:PGSC0003DMG400017051	EnsemblPlants:PGSC0003DMT400043930	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF7	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002969D7B
SEG:seg	:	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400017051]

Coordinates

chr1:-:71210216..71211064

Molecular Weight (calculated)

31691.3 Da

IEP (calculated)

9.292

GRAVY (calculated)

-0.872

Length

282 amino acids

Sequence
(BLAST)

001: MKTTITTNTN TTKSSSTQPK KSSITRKFVG VRQRPSGRWV AEIKDSSQRV RLWLGTYDTA EEAAHAYDEA ARALRGENAR TNFASTAPNS DMDQSHSSHD
101: TKHGLSFSSI KEKLSKNLQS IMARNSENKS SSSSKSITRV SDHFTFARIF HFKNNYDQQY QNHHRHVDMN KVVQPSIRVL PQDVTDNNNN NDLCWENSSS
201: VSDCSSEWAA FRQLGLDSDN YGSDGSDQYF VGSDPLMAGW ISSPDIMSNS TNEGSSRSKR FKVSSSVMVP PTFSEKIMYH FN

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.