Factsheet for PGSC0003DMT400003403

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g088310.1.1	Tomato	nucleus	55.4	66.29
VIT_14s0108g01220.t01	Wine grape	nucleus	42.49	58.39
PGSC0003DMT400064752	Potato	nucleus	42.25	48.0
KRH01227	Soybean	nucleus	43.9	45.28
KRH18447	Soybean	nucleus	42.25	43.69
KRG93579	Soybean	nucleus	41.08	41.77
GSMUA_Achr4P28070_001	Banana	nucleus	35.21	40.32
PGSC0003DMT400060936	Potato	nucleus	19.25	29.71
PGSC0003DMT400021535	Potato	nucleus	17.84	28.25
PGSC0003DMT400063264	Potato	nucleus	11.03	26.55
PGSC0003DMT400014324	Potato	nucleus	15.96	20.73
PGSC0003DMT400043930	Potato	nucleus	13.62	20.57

Protein Annotations

EntrezGene:102601423	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0ZLL2	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400001343	PGSC:PGSC0003DMG400001343
EnsemblPlants:PGSC0003DMT400003403	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF41	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000294CADE	RefSeq:XP_006338418.1	SEG:seg	:	:

Description

WIN1 [Source:PGSC_GENE;Acc:PGSC0003DMG400001343]

Coordinates

chr2:-:45943145..45944644

Molecular Weight (calculated)

47361.5 Da

IEP (calculated)

4.232

GRAVY (calculated)

-0.637

Length

426 amino acids

Sequence
(BLAST)

001: MARKRRASEA LGENIRDNDQ GNVAWDEMVK ETAVAAALGG ARRARKRFVG VRQRPSGRWV AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR
101: TNFWPCSSSS SSTPALPSKI TNLLINRLKA RNNSLAAAAA AAASSSSSSD SSEPVEIHDQ DKQGEEFKEE EAYFSDLQYM EYLKDPEDLI TENNMISNMS
201: AINVSNFTNT LETCLAVNDY SVIQPVKSDE NSIAGEINNI VKVDSEEEIE EENNTDIGDV EVEPIDFQFV DEIGSSCYYS PFEEINSSEI MEEGMIYGDE
301: SSMLSEAMRR MNYERKFSAS LYAFNGITEC LKLKLKSGGG VMQRERSEQL SRLINACKRN RNNEEEEEKK IKDSEYSSES SSETGPSSSS PETGSSSSTI
401: SEETTYDSEL SLWNSIDLPP ICAFFT

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.