CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93579	Soybean	nucleus	79.61	78.28
VIT_14s0108g01220.t01	Wine grape	nucleus	44.17	58.71
KRH01227	Soybean	nucleus	57.28	57.14
Solyc02g067020.1.1	Tomato	nucleus	33.98	46.67
PGSC0003DMT400003403	Potato	nucleus	43.69	42.25
PGSC0003DMT400064752	Potato	nucleus	35.68	39.2
Solyc02g088310.1.1	Tomato	nucleus	31.07	35.96
KRG89549	Soybean	nucleus	26.94	33.23
KRG94843	Soybean	nucleus, plastid	20.87	31.27
KRH06691	Soybean	nucleus, plastid	21.12	30.53
KRH58943	Soybean	nucleus	17.23	28.51
KRH08506	Soybean	nucleus	21.36	26.19
KRH56725	Soybean	nucleus	12.86	25.98
KRH70168	Soybean	nucleus	19.66	25.08
KRH03847	Soybean	nucleus	12.86	21.12
KRH48263	Soybean	plastid	16.99	21.02
KRH65161	Soybean	plastid	16.02	19.35
KRH42840	Soybean	plastid	6.55	18.0
KRH11052	Soybean	nucleus	15.53	17.68

Protein Annotations

EntrezGene:100786711	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02008072	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_13G060600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K7LXI9	EnsemblPlants:KRH18447	ProteinID:KRH18447
ProteinID:KRH18447.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF41
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233C0BC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:15790323..15791561

Molecular Weight (calculated)

46370.8 Da

IEP (calculated)

4.422

GRAVY (calculated)

-0.736

Length

412 amino acids

Sequence
(BLAST)

001: MARKRKVAEV VEERDLCEGT LGWDEMMKQA AALGGVQRAR KRFVGVRQRP SGRWVAEIKD TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GTNTRTNFWP
101: CSQSSTSPAL SSKITNLLLQ RLKERNNNNT CSSSSSSSTS LLINHQQMHQ QVGAYGEGST QFSIDQFTDF LNDPEDYSTS NNDFINNSAQ IDYITSSFES
201: CLTEKDGGTK IDMQYKSRNV TPQTSSNDSN SGVEDSEEEG SDLGVQSTNL DVHDFKFLDN IAPPSYYSPF EMAEEMEEEP VEPENENYGD EPSMLRAVMK
301: RMTYERKFSA SLYAFNGIPE CLKLKLESGN MKGRGLADQL TSLQMACSKN ILEKNKEEKE YIGTMDRRQE EEHQQTSPDM DSSSVDGELL LWNSLDLPPI
401: CFVNLLENGS FN

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.