CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01227	Soybean	nucleus	34.43	27.84
KRH06691	Soybean	nucleus, plastid	23.35	27.37
KRH18447	Soybean	nucleus	33.23	26.94
KRG94843	Soybean	nucleus, plastid	21.86	26.55
KRH56725	Soybean	nucleus	16.17	26.47
KRG93579	Soybean	nucleus	32.93	26.25
KRH70168	Soybean	nucleus	23.65	24.46
KRH58943	Soybean	nucleus	17.07	22.89
KRH08506	Soybean	nucleus	22.46	22.32
KRH03847	Soybean	nucleus	14.37	19.12
KRH48263	Soybean	plastid	18.56	18.62
KRH65161	Soybean	plastid	18.56	18.18
KRH11052	Soybean	nucleus	17.96	16.57
KRH42840	Soybean	plastid	5.69	12.67

Protein Annotations

EntrezGene:100793940	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02012216	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_20G031000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K7N142	EnsemblPlants:KRG89549
ProteinID:KRG89549	ProteinID:KRG89549.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194
PANTHER:PTHR31194:SF41	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233DAEA	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:3774438..3775442

Molecular Weight (calculated)

37580.7 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.646

Length

334 amino acids

Sequence
(BLAST)

001: MANKRKRWEG QGDQGNSEEG NIELEQLREE AASMAADILV ARRAKKRYIG VRQRPSGRWV SEIKDTIQNI RLWLGTYDTA EDAARAYDEA ARLLRGANTR
101: TNFFSSQSSP NSVPALPLKI AKLLLLRLKA RNMASSCVVT PFPSNHYEPE PESHFYHQIE ESYYGNSLDM VGNGIVEQNY YCASYSSSAI ITTCDFSCGT
201: NEENSNLEGS SREDSRLGYH CDDNVYDQNN QIVSGKEFED CDAGIRDLQF LDTAGSLSCF FSPFEIAEEM VGSIEEEEKY RVDDSPLGRE SFRMKYERKF
301: SACLYTLIGV SECLSLQVGP GNGKELEKKI EDGK

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.