CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18447	Soybean	nucleus	57.14	57.28
KRG93579	Soybean	nucleus	58.11	57.28
VIT_14s0108g01220.t01	Wine grape	nucleus	42.86	57.1
Solyc02g067020.1.1	Tomato	nucleus	33.9	46.67
PGSC0003DMT400003403	Potato	nucleus	45.28	43.9
PGSC0003DMT400064752	Potato	nucleus	36.08	39.73
Solyc02g088310.1.1	Tomato	nucleus	32.69	37.92
KRG89549	Soybean	nucleus	27.84	34.43
KRG94843	Soybean	nucleus, plastid	21.31	32.0
KRH58943	Soybean	nucleus	18.89	31.33
KRH06691	Soybean	nucleus, plastid	21.55	31.23
KRH56725	Soybean	nucleus	13.32	26.96
KRH70168	Soybean	nucleus	21.07	26.93
KRH08506	Soybean	nucleus	21.55	26.49
KRH03847	Soybean	nucleus	13.56	22.31
KRH65161	Soybean	plastid	16.71	20.23
KRH48263	Soybean	plastid	15.74	19.52
KRH11052	Soybean	nucleus	16.95	19.34
KRH42840	Soybean	plastid	6.54	18.0

Protein Annotations

EntrezGene:100796159	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02011508	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_18G262800	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K7MUV5	EnsemblPlants:KRH01227
ProteinID:KRH01227	ProteinID:KRH01227.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194
PANTHER:PTHR31194:SF41	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233E9E1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:54832649..54833890

Molecular Weight (calculated)

46672.8 Da

IEP (calculated)

4.260

GRAVY (calculated)

-0.769

Length

413 amino acids

Sequence
(BLAST)

001: MARKRKVTEA VEERNPCEAT MAWEEVMKEA AELGSARRLR KKFVGVRQRP SGRWVAEIKD TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP
101: SSQSSSTPAL PSKITNLLLQ RLKARNNNNN NNPCSLSSSS SSSSLFINHQ QKQLEDVCGT ESTFFSMDLF SDFLNDPEDY STSNDEFSND SAQIDYITSS
201: LESCLNGNDD CREKEKEMEM EFDFSSVTPT SSADVNSGGE REEESEEATD LSAQDFQFLD NDVPPGYFYS PFEIAEDIEE QLEPENYGDE PSMLREVMKR
301: MKYERKFSAS LYAFNGIPEC LKLKLESGNT NGRGVSISNQ LTNLKMACSK NKNEANKKNE EYIEAMDRKE EENPQTSIGM ECSSLSFSSR IDDDDGELLL
401: WNSLDLPTLC FVN

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.