Factsheet for VIT_14s0108g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067020.1.1	Tomato	nucleus	43.23	44.67
KRH18447	Soybean	nucleus	58.71	44.17
KRG93579	Soybean	nucleus	58.06	42.96
KRH01227	Soybean	nucleus	57.1	42.86
PGSC0003DMT400003403	Potato	nucleus	58.39	42.49
PGSC0003DMT400064752	Potato	nucleus	46.77	38.67
GSMUA_Achr4P28070_001	Banana	nucleus	45.81	38.17
VIT_08s0007g07250.t01	Wine grape	plastid	28.39	33.85
Solyc02g088310.1.1	Tomato	nucleus	37.74	32.87
VIT_06s0004g00490.t01	Wine grape	nucleus	26.13	30.0
VIT_17s0000g04480.t01	Wine grape	nucleus	18.71	25.33
VIT_02s0025g03170.t01	Wine grape	nucleus	21.29	21.02

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CBI22258
ProteinID:CBI22258.3	ncoils:Coil	UniProt:D7SXG1	InterPro:DNA-bd_dom_sf	EMBL:FN595239	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF41	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0001BE2253	ArrayExpress:VIT_14s0108g01220	EnsemblPlantsGene:VIT_14s0108g01220	EnsemblPlants:VIT_14s0108g01220.t01	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:29853967..29855166

Molecular Weight (calculated)

34210.9 Da

IEP (calculated)

4.922

GRAVY (calculated)

-0.595

Length

310 amino acids

Sequence
(BLAST)

001: MARKRKAGEC VEEKIPSEGN MAWDEMVKEA AAAAALGGAR RARKRFVGVR QRPSGRWVAE IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN
101: FWPCSPSSSS TPALPSKITN LLLHRLKTRS NASASSASVP INHEQKQLEE YREEVTDFSD TQFTDFLNDP EDYVTCNNII ADASPSASEY MTISPDPSFT
201: KESCGSKEPD LDCNWTDVVE SSSGDGTFAA MKRMVYERKF SASLYAFNGI PECLKLKLGS GNVNGKSGMS DQLTKLQDAC NKNQEKDENN NDGELSLWSS
301: LDLPPICFVN

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.