Factsheet for VIT_08s0007g07250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94843	Soybean	nucleus, plastid	59.23	56.0
KRH06691	Soybean	nucleus, plastid	60.77	55.44
VIT_06s0004g00490.t01	Wine grape	nucleus	47.69	45.93
PGSC0003DMT400021535	Potato	nucleus	45.77	44.24
Solyc10g078610.1.1	Tomato	nucleus	47.31	42.27
Solyc10g080650.1.1	Tomato	nucleus	39.62	41.37
PGSC0003DMT400060936	Potato	nucleus	43.85	41.3
KRH70168	Soybean	nucleus	51.15	41.18
KRH08506	Soybean	nucleus	51.15	39.58
VIT_14s0108g01220.t01	Wine grape	nucleus	33.85	28.39
VIT_17s0000g04480.t01	Wine grape	nucleus	19.62	22.27
VIT_02s0025g03170.t01	Wine grape	nucleus	22.31	18.47

Protein Annotations

EntrezGene:100265914	wikigene:100265914	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CBI29953	ProteinID:CBI29953.3	UniProt:D7TI77	InterPro:DNA-bd_dom_sf	EMBL:FN595991
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EntrezGene:LOC100265914	wikigene:LOC100265914	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194
PANTHER:PTHR31194:SF20	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00015CA6C1	ArrayExpress:VIT_08s0007g07250	EnsemblPlantsGene:VIT_08s0007g07250
EnsemblPlants:VIT_08s0007g07250.t01	RefSeq:XP_002281619	RefSeq:XP_002281619.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:20880150..20881005

Molecular Weight (calculated)

28693.5 Da

IEP (calculated)

5.485

GRAVY (calculated)

-0.552

Length

260 amino acids

Sequence
(BLAST)

001: MEIQFQQPKG AIPATKVRKF KGRNRSNSNN KFVGVRQRPS GRWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFIPN VSSNSPLASR
101: IRTLLDNKKG AKQPKQTSVD SSNISTTIVT PCASSCTSSG SNSLSSEKIQ ETQLFDDAYK PDLSNCSEEV ELGSSESGLS WGFAAGFDRF SFAQQVLDLP
201: KNGGLQEAAE GEFSEFERMK VERQISASLY AMNGVQEYMD TVHDPSDALW DLPPLCSLFC

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.