CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70168	Soybean	nucleus	56.55	58.82
KRG94843	Soybean	nucleus, plastid	43.45	53.09
KRH06691	Soybean	nucleus, plastid	44.35	52.28
VIT_08s0007g07250.t01	Wine grape	plastid	39.58	51.15
PGSC0003DMT400021535	Potato	nucleus	35.42	44.24
PGSC0003DMT400060936	Potato	nucleus	34.82	42.39
Solyc10g078610.1.1	Tomato	nucleus	36.01	41.58
Solyc10g080650.1.1	Tomato	nucleus	30.65	41.37
KRH58943	Soybean	nucleus	26.49	35.74
KRH56725	Soybean	nucleus	15.18	25.0
KRH42840	Soybean	plastid	10.42	23.33
KRG89549	Soybean	nucleus	22.32	22.46
KRH01227	Soybean	nucleus	26.49	21.55
KRH18447	Soybean	nucleus	26.19	21.36
KRG93579	Soybean	nucleus	25.3	20.29
KRH03847	Soybean	nucleus	14.58	19.52
KRH48263	Soybean	plastid	16.07	16.22
KRH65161	Soybean	plastid	16.07	15.84
KRH11052	Soybean	nucleus	16.07	14.92

Protein Annotations

EntrezGene:100792432	MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	EMBL:ACUP02010182	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_16G154100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1MNV3	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH08506	ProteinID:KRH08506
ProteinID:KRH08506.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF20
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00023D6DB8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:-:31458458..31459539

Molecular Weight (calculated)

37771.6 Da

IEP (calculated)

5.467

GRAVY (calculated)

-0.785

Length

336 amino acids

Sequence
(BLAST)

001: MEIQFQHPKQ HLRANTSKGG KVFKGRNNNK TKSKYVGVRQ RASGKWVAEI KDTTQKIRMW LGTYETAEEA ARAYDEAACL LRGSNTRTNF ITRVSLDSPL
101: ASRIQNLLNS RNGTKTKHQE QDVETCHTRI KSNRQESSVA LAEGTCPPQH DELRFESSLE DMSTFSIQPY IDQDCLQKKI LVENEKKRRV NSTTSTASAS
201: TSNSTNSSNN SDTCENSLSS ETTQNTQQFD DDDDAYRPDL SNFIGSESGS QNNPSWGFEP SSFVHFPFSQ VMDVANLPDI AGLELPDFER MKVERQISAS
301: LYAINGVQEY MDTVTVQDSN NNVAIWDFPP LCSFLC

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.