CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70891	Canola	nucleus	80.63	80.31
CDX92500	Canola	nucleus	75.49	75.2
CDY35855	Canola	nucleus	75.49	74.9
CDY42296	Canola	nucleus	74.31	74.31
CDY44943	Canola	nucleus	73.52	74.1
AT5G19790.1	Thale cress	nucleus	73.91	73.91
Solyc01g005630.1.1	Tomato	nucleus	38.34	41.45
VIT_06s0004g00490.t01	Wine grape	nucleus	42.69	40.0
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	37.94	36.36
KRH58943	Soybean	nucleus	33.6	34.14

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	GO:A0A078DJQ0	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDX88874	ProteinID:CDX88874	ProteinID:CDX88874.1	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00148963001
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF5	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0004EE5881	SEG:seg

Description

BnaA03g07750D

Coordinates

chrLK031856:+:1399399..1400160

Molecular Weight (calculated)

28856.9 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.780

Length

253 amino acids

Sequence
(BLAST)

001: MEHHQTTQKQ KIKKKSKGTN KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFETAEEAA RAYDEAACLL RGSNTRTNFA NHFPNNSQLS LKIRNLLHQK
101: QNLKHQQQQQ NKPASFFLEH NINYTSPATC PTANPTTTLM PFSNVYHPDL PAILQPEADS IQLPYSWPLV SELNHQVPLA KYRVEEAHGH LNDHNSTEQH
201: SGLADIERQI SASLYAMNGA TTHYDNMHSE YPIFDPTDPI WDLPSLSQLF CPT

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.