CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020063.1-P	Field mustard	nucleus	100.0	100.0
CDY42296	Canola	nucleus	95.62	94.86
AT5G19790.1	Thale cress	nucleus	80.48	79.84
CDX92500	Canola	nucleus	80.48	79.53
CDY35855	Canola	nucleus	80.48	79.22
CDX88874	Canola	nucleus	74.1	73.52
CDX70891	Canola	nucleus	68.92	68.11
Solyc01g005630.1.1	Tomato	nucleus	37.85	40.6
VIT_06s0004g00490.t01	Wine grape	nucleus	43.03	40.0
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	37.85	35.98
KRH58943	Soybean	nucleus	33.47	33.73

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	GO:A0A078I721	UniProt:A0A078I721	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY44943	ProteinID:CDY44943	ProteinID:CDY44943.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00081101001	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF5	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00025432E9	SEG:seg	:	:	:

Description

BnaA02g04480DBnaA02g04480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I721]

Coordinates

chrLK032606:-:156911..157666

Molecular Weight (calculated)

28406.3 Da

IEP (calculated)

8.305

GRAVY (calculated)

-0.794

Length

251 amino acids

Sequence
(BLAST)

001: MEQKTTQKKK TKEKSKDNNK KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFETAEEAA RAYDEAACLL RGSNTRTNFA NHFPNNSPLS LKIRNLLYQK
101: QSMKQQQKQQ NKHISSIAEC NINYTSPATS PTASTTTTMM PLNDVYRPDS TIISQPETES IHLPYSCPFV SGFNHQVPMT HGGEETQGHL NNQYSTDQHL
201: GLADIEREIS ASLYAMNGAT YYNNTNAEYA IFDPTDPIWD LPSLSQLFCP I

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.