Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G216400.1 | Wheat | nucleus | 74.0 | 73.03 |
| TraesCS5B01G216500.1 | Wheat | nucleus | 73.33 | 72.37 |
| TraesCS5A01G217500.1 | Wheat | nucleus | 71.33 | 69.48 |
| TraesCS5D01G225600.1 | Wheat | nucleus | 58.0 | 57.24 |
| HORVU4Hr1G087980.1 | Barley | nucleus | 40.0 | 48.0 |
| HORVU7Hr1G118510.1 | Barley | nucleus | 32.67 | 44.55 |
| KXG39278 | Sorghum | nucleus | 36.0 | 41.22 |
| EER92201 | Sorghum | nucleus | 34.0 | 41.13 |
| Zm00001d005787_P001 | Maize | nucleus | 37.33 | 40.88 |
| Zm00001d005786_P001 | Maize | nucleus | 37.33 | 40.88 |
| HORVU7Hr1G118490.1 | Barley | nucleus | 32.0 | 40.68 |
| EER98944 | Sorghum | nucleus | 42.67 | 40.51 |
| HORVU5Hr1G063360.1 | Barley | nucleus | 33.33 | 40.32 |
| Zm00001d020575_P001 | Maize | nucleus | 40.67 | 39.87 |
| Zm00001d020574_P001 | Maize | nucleus | 40.67 | 39.87 |
| Zm00001d020573_P001 | Maize | nucleus | 40.67 | 39.87 |
| HORVU4Hr1G083170.1 | Barley | nucleus, plastid | 46.67 | 39.55 |
| OQU92525 | Sorghum | nucleus | 35.33 | 35.81 |
| OQU92524 | Sorghum | cytosol | 32.0 | 35.04 |
| HORVU2Hr1G077570.1 | Barley | nucleus | 31.33 | 30.32 |
| GSMUA_Achr10P... | Banana | nucleus | 26.67 | 27.97 |
| HORVU7Hr1G118500.1 | Barley | nucleus | 27.33 | 21.58 |
Protein Annotations
| EMBL:AK375340 | EnsemblPlants:HORVU5Hr1G063390.1 | EnsemblPlantsGene:HORVU5Hr1G063390 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF311 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0002008A67 | UniProt:F2EGR3 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EGR3]
Coordinates
chrchr5H:+:492217547..492218331
Molecular Weight (calculated)
16485.3 Da
IEP (calculated)
6.934
GRAVY (calculated)
-0.768
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLNSWEQD ENELNLELTL RMTWAAEAEE ELGGFFLCVY CDRKFRSSQA LGGHQNAHKH ERSVAKRRRE IAASTRAHGA GAPPAAAQEQ DARPCGYAGD
101: SDFTSAKARR TEPQKAAAPM LAGMARKRAK GPSEYGYGAV DEGMDLSLRL
101: SDFTSAKARR TEPQKAAAPM LAGMARKRAK GPSEYGYGAV DEGMDLSLRL
001: MELNLSTPTS CSSSSISSSS HEAIPRTKGK TKEEVTAEPS KENQQRLEFR FLFNESSTRN EAKARVFACT FCKKEFSTSQ ALGGHQNAHK QERSLAKRRK
101: EIEINYPELS IYSQYPPSGL SFSSSSSQYD LGVRYNPNIA KTTKPYPFNI FACRFGYRGG LNFPPMSHLS VPKTDDLSIN LISNLEGSIH DQAVKKDQPE
201: ADPCKDSDID LSLKL
101: EIEINYPELS IYSQYPPSGL SFSSSSSQYD LGVRYNPNIA KTTKPYPFNI FACRFGYRGG LNFPPMSHLS VPKTDDLSIN LISNLEGSIH DQAVKKDQPE
201: ADPCKDSDID LSLKL
Arabidopsis Description
C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LZW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.