Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
26928395
|
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68289 | Canola | nucleus, plastid | 100.0 | 100.0 |
| TraesCS7D01G061900.1 | Wheat | nucleus, plastid | 100.0 | 100.0 |
| TraesCS7A01G442900.1 | Wheat | nucleus, plastid | 100.0 | 100.0 |
| Solyc04g081150.2.1 | Tomato | nucleus, plastid | 100.0 | 100.0 |
| KRH17395 | Soybean | nucleus, plastid | 100.0 | 100.0 |
| HORVU7Hr1G100690.1 | Barley | nucleus, plastid | 100.0 | 100.0 |
| CDY13557 | Canola | nucleus, plastid | 100.0 | 100.0 |
| HORVU3Hr1G017120.2 | Barley | cytosol, plastid | 20.59 | 8.92 |
| HORVU2Hr1G086020.2 | Barley | mitochondrion | 28.68 | 7.99 |
| HORVU4Hr1G074960.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 25.74 | 7.46 |
| HORVU5Hr1G070810.1 | Barley | golgi | 25.74 | 6.99 |
| HORVU4Hr1G051230.6 | Barley | endoplasmic reticulum, golgi, mitochondrion | 25.74 | 6.97 |
| HORVU7Hr1G043230.10 | Barley | golgi, plastid | 25.0 | 6.71 |
| HORVU7Hr1G036450.20 | Barley | golgi | 25.74 | 6.63 |
| HORVU6Hr1G072260.25 | Barley | cytosol | 25.0 | 6.61 |
| HORVU1Hr1G073150.1 | Barley | plastid | 25.74 | 5.84 |
| HORVU2Hr1G097570.8 | Barley | plastid | 21.32 | 5.78 |
| HORVU5Hr1G061540.6 | Barley | nucleus, plasma membrane, plastid | 24.26 | 5.18 |
| HORVU2Hr1G096100.42 | Barley | mitochondrion, plastid | 21.32 | 5.0 |
| HORVU7Hr1G058080.1 | Barley | plastid | 22.79 | 4.78 |
| HORVU5Hr1G086560.1 | Barley | golgi | 19.85 | 4.66 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.4 | EMBL:AK355128 | EMBL:AK356372 | EMBL:AK375440 | UniProt:F2CU26 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 |
| EnsemblPlantsGene:HORVU7Hr1G033030 | EnsemblPlants:HORVU7Hr1G033030.1 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H3/CENP-A | InterPro:IPR009072 |
| PFAM:PF00125 | PRINTS:PR00622 | ScanProsite:PS00322 | ScanProsite:PS00959 | PANTHER:PTHR11426 | PANTHER:PTHR11426:SF163 |
| SMART:SM00428 | SUPFAM:SSF47113 | UniParc:UPI0000000067 | : | : | : |
Description
Histone H3 [Source:UniProtKB/TrEMBL;Acc:F2CU26]
Coordinates
chrchr7H:-:67223891..67224952
Molecular Weight (calculated)
15407.0 Da
IEP (calculated)
11.739
GRAVY (calculated)
-0.602
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA
001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA
Arabidopsis Description
HTR8Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.