Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G018000.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 95.74 | 95.33 |
| TraesCS4B01G286100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 95.31 | 94.9 |
| TraesCS4D01G284800.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 94.88 | 94.48 |
| EER92792 | Sorghum | endoplasmic reticulum, golgi | 85.07 | 87.12 |
| Zm00001d048323_P001 | Maize | endoplasmic reticulum, golgi, vacuole | 82.73 | 84.72 |
| Os03t0169000-01 | Rice | endoplasmic reticulum, golgi, vacuole | 84.01 | 84.55 |
| Zm00001d027842_P003 | Maize | endoplasmic reticulum, golgi, plasma membrane | 82.73 | 71.45 |
| PGSC0003DMT400072871 | Potato | cytosol, extracellular | 57.14 | 68.89 |
| Solyc01g010930.2.1 | Tomato | cytosol, extracellular | 38.59 | 67.79 |
| HORVU3Hr1G017120.2 | Barley | cytosol, plastid | 43.5 | 64.97 |
| CDY04145 | Canola | cytosol | 49.89 | 63.76 |
| GSMUA_Achr8P16870_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 64.82 | 62.17 |
| Solyc05g013140.2.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 65.46 | 61.03 |
| AT1G14020.1 | Thale cress | cytosol, endoplasmic reticulum, golgi | 63.97 | 60.12 |
| KRH50557 | Soybean | cytosol | 63.75 | 59.92 |
| CDX96871 | Canola | cytosol, endoplasmic reticulum, nucleus, plastid | 63.33 | 59.64 |
| Bra016714.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus, plastid | 63.33 | 59.64 |
| CDY62211 | Canola | cytosol, endoplasmic reticulum, peroxisome, plastid | 63.33 | 59.52 |
| KRG89556 | Soybean | mitochondrion, plastid | 44.78 | 58.33 |
| KRH74924 | Soybean | cytosol | 62.9 | 58.3 |
| KRH70785 | Soybean | cytosol, nucleus, vacuole | 62.9 | 58.3 |
| CDY64492 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 58.85 | 57.98 |
| AT2G03280.2 | Thale cress | cytosol, endoplasmic reticulum, golgi | 60.34 | 55.71 |
| HORVU4Hr1G051230.6 | Barley | endoplasmic reticulum, golgi, mitochondrion | 59.28 | 55.38 |
| HORVU5Hr1G070810.1 | Barley | golgi | 58.85 | 55.09 |
| CDY36425 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 52.67 | 53.58 |
| HORVU7Hr1G043230.10 | Barley | golgi, plastid | 55.22 | 51.08 |
| HORVU6Hr1G072260.25 | Barley | cytosol | 52.88 | 48.25 |
| Bra017390.1-P | Field mustard | nucleus | 58.0 | 39.94 |
| HORVU2Hr1G086020.2 | Barley | mitochondrion | 41.36 | 39.75 |
| HORVU7Hr1G036450.20 | Barley | golgi | 42.22 | 37.5 |
| HORVU2Hr1G097570.8 | Barley | plastid | 36.89 | 34.46 |
| HORVU1Hr1G073150.1 | Barley | plastid | 40.94 | 32.05 |
| HORVU5Hr1G061540.6 | Barley | nucleus, plasma membrane, plastid | 42.64 | 31.4 |
| HORVU5Hr1G086560.1 | Barley | golgi | 35.39 | 28.67 |
| HORVU2Hr1G096100.42 | Barley | mitochondrion, plastid | 35.18 | 28.45 |
| HORVU7Hr1G058080.1 | Barley | plastid | 36.25 | 26.19 |
| HORVU7Hr1G100690.1 | Barley | nucleus, plastid | 7.46 | 25.74 |
| HORVU7Hr1G033030.1 | Barley | extracellular | 7.46 | 25.74 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G074960.11 | EnsemblPlantsGene:HORVU4Hr1G074960 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005975 | GO:GO:0006004 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016740 | GO:GO:0016757 | InterPro:FucosylTrfase_pln | InterPro:GDP-Fuc_O-FucTrfase |
| PANTHER:PTHR31741 | PANTHER:PTHR31741:SF3 | PFAM:PF10250 | PIRSF:PIRSF009360 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000B460974 | UniProt:A0A287PQ47 | MapMan:21.3.2.1.1 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:596062766..596066623
Molecular Weight (calculated)
53238.5 Da
IEP (calculated)
9.649
GRAVY (calculated)
-0.280
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSRPRFWL VAGCAALLLW ASVAQLVAVS RLLVLFGLAG GAPAPSPPPS SPPPPSPGIY KSNGYLKISC NGGLNQMRSE ICDMVAVARL LNLTMVVPEL
101: DKRSFWADQS NFGDIFDVRH FITTLRDEVR IVKRLPKRFG PTDSSITLDM SPVSWSDEKY YLHQILPLFS KYKVIHFNKT DARLANNGIS TELQLVRCRV
201: NFRALKFTPQ IEALGNKLVW KLRDKGSFVA LHLRYEMDML AFSGCNHGLN PEEAEELKRM RYAYPWWREK EIDSKAKRSE GLCPLTPEEA SLVLKALGFE
301: KDTLVYIAAG EIYGGEKRLE PLRAAFPKLV RKEMLLDSEP LRQFQNHSSQ MAALDFIVST ASDVFLPTYD GNMAKLVEGH RRFLGFRKSV LPDRRKLVEL
401: IDLYTNKTIS WENFTSSVQE VHRGRVVQPS CRRKLENKPK EEDYFYSNPH ECLANSSLCS GTKNTVTVR
101: DKRSFWADQS NFGDIFDVRH FITTLRDEVR IVKRLPKRFG PTDSSITLDM SPVSWSDEKY YLHQILPLFS KYKVIHFNKT DARLANNGIS TELQLVRCRV
201: NFRALKFTPQ IEALGNKLVW KLRDKGSFVA LHLRYEMDML AFSGCNHGLN PEEAEELKRM RYAYPWWREK EIDSKAKRSE GLCPLTPEEA SLVLKALGFE
301: KDTLVYIAAG EIYGGEKRLE PLRAAFPKLV RKEMLLDSEP LRQFQNHSSQ MAALDFIVST ASDVFLPTYD GNMAKLVEGH RRFLGFRKSV LPDRRKLVEL
401: IDLYTNKTIS WENFTSSVQE VHRGRVVQPS CRRKLENKPK EEDYFYSNPH ECLANSSLCS GTKNTVTVR
001: MSVVVGDRSE STLMRSDYKA PPSQAIPKAR LQVWFFRVCS CILVWTCLIQ LFWHSQIFTG LTNHISRFSL PVQSVPLPPP LPPRNYTSNG ILLVSCNGGL
101: NQMRAAICDM VTVARLLNLT LVVPELDKKS FWADTSDFED IFDIKHFIDS LRDEVRIIRR LPKRYSKKYG FKLFEMPPVS WSNDKYYLQQ VLPRFSKRKV
201: IHFVRSDTRL ANNGLSLDLQ RLRCRVNFQG LRFTPRIEAL GSKLVRILQQ RGSFVALHLR YEMDMLAFSG CTHGCTDEEA EELKKMRYAY PWWREKEIVS
301: EERRVQGLCP LTPEEAVLVL KALGFQKDTQ IYIAAGEIFG GAKRLALLKE SFPRIVKKEM LLDPTELQQF QNHSSQMAAL DFIVSVASNT FIPTYYGNMA
401: KVVEGHRRYL GFKKTILLDR KRLVELLDLH NNKTLSWDQF AVAVKDAHQG RRMGEPTHRK VISVRPKEED YFYANPQECI S
101: NQMRAAICDM VTVARLLNLT LVVPELDKKS FWADTSDFED IFDIKHFIDS LRDEVRIIRR LPKRYSKKYG FKLFEMPPVS WSNDKYYLQQ VLPRFSKRKV
201: IHFVRSDTRL ANNGLSLDLQ RLRCRVNFQG LRFTPRIEAL GSKLVRILQQ RGSFVALHLR YEMDMLAFSG CTHGCTDEEA EELKKMRYAY PWWREKEIVS
301: EERRVQGLCP LTPEEAVLVL KALGFQKDTQ IYIAAGEIFG GAKRLALLKE SFPRIVKKEM LLDPTELQQF QNHSSQMAAL DFIVSVASNT FIPTYYGNMA
401: KVVEGHRRYL GFKKTILLDR KRLVELLDLH NNKTLSWDQF AVAVKDAHQG RRMGEPTHRK VISVRPKEED YFYANPQECI S
Arabidopsis Description
SUBAcon: [endoplasmic reticulum,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.