Subcellular Localization
min:
: max
Winner_takes_all: cytosol, golgi, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 1
- mitochondrion 1
- cytosol 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04145 | Canola | cytosol | 60.63 | 83.92 |
| CDY64492 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 77.76 | 82.98 |
| AT1G14020.1 | Thale cress | cytosol, endoplasmic reticulum, golgi | 77.17 | 78.56 |
| PGSC0003DMT400072871 | Potato | cytosol, extracellular | 56.1 | 73.26 |
| Solyc01g010930.2.1 | Tomato | cytosol, extracellular | 37.6 | 71.54 |
| Solyc05g013140.2.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 68.5 | 69.18 |
| KRH70785 | Soybean | cytosol, nucleus, vacuole | 66.73 | 67.0 |
| KRH50557 | Soybean | cytosol | 65.16 | 66.33 |
| KRH74924 | Soybean | cytosol | 65.75 | 66.01 |
| KRG89556 | Soybean | mitochondrion, plastid | 46.26 | 65.28 |
| GSMUA_Achr8P16870_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 61.42 | 63.8 |
| EER92792 | Sorghum | endoplasmic reticulum, golgi | 57.28 | 63.54 |
| Zm00001d048323_P001 | Maize | endoplasmic reticulum, golgi, vacuole | 56.3 | 62.45 |
| Os03t0169000-01 | Rice | endoplasmic reticulum, golgi, vacuole | 56.89 | 62.02 |
| TraesCS4A01G018000.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 56.5 | 60.93 |
| TraesCS4D01G284800.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 56.1 | 60.51 |
| TraesCS4B01G286100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 56.1 | 60.51 |
| HORVU4Hr1G074960.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 55.71 | 60.34 |
| Bra017390.1-P | Field mustard | nucleus | 74.02 | 55.21 |
| AT5G15740.1 | Thale cress | golgi | 53.15 | 53.15 |
| Zm00001d027842_P003 | Maize | endoplasmic reticulum, golgi, plasma membrane | 55.91 | 52.3 |
| AT3G02250.1 | Thale cress | golgi | 52.17 | 51.76 |
| AT5G64600.1 | Thale cress | mitochondrion | 39.37 | 38.31 |
| AT1G22460.1 | Thale cress | golgi | 38.58 | 34.69 |
| AT4G16650.2 | Thale cress | mitochondrion, plastid | 36.81 | 34.06 |
| AT4G38390.1 | Thale cress | endoplasmic reticulum, nucleus, plasma membrane | 35.24 | 32.49 |
| AT2G37980.1 | Thale cress | plastid | 39.76 | 31.66 |
| AT1G76270.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 34.84 | 30.94 |
| AT5G35570.1 | Thale cress | cytosol, plastid | 39.57 | 30.83 |
| AT1G20550.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 33.66 | 30.32 |
| AT3G54100.1 | Thale cress | cytosol | 37.99 | 30.25 |
| AT5G01100.1 | Thale cress | plastid | 37.4 | 30.11 |
Protein Annotations
| MapMan:21.3.2.1.1 | EntrezGene:814857 | ProteinID:AEC05683.1 | ArrayExpress:AT2G03280 | EnsemblPlantsGene:AT2G03280 | RefSeq:AT2G03280 |
| TAIR:AT2G03280 | RefSeq:AT2G03280-TAIR-G | EnsemblPlants:AT2G03280.2 | TAIR:AT2G03280.2 | Unigene:At.71239 | InterPro:FucosylTrfase_pln |
| InterPro:GDP-Fuc_O-FucTrfase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 |
| GO:GO:0016757 | RefSeq:NP_001030963.1 | PFAM:PF10250 | PIRSF:PIRSF009360 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31741 | PANTHER:PTHR31741:SF3 | TMHMM:TMhelix |
| UniParc:UPI00005DBF1B | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:996088..998455
Molecular Weight (calculated)
58870.7 Da
IEP (calculated)
9.861
GRAVY (calculated)
-0.222
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVVVGDRSE STLMRSDYKA PPSQAIPKAR LQVWFFRVCS CILVWTCLIQ LFWHSQIFTG LTNHISRFSL PVQSVPLPPP LPPRNYTSNG ILLVSCNGGL
101: NQMRAAICDM VTVARLLNLT LVVPELDKKS FWADTRYMFV SHVNDPTRFV CSLKHSFVSS FYSDFEDIFD IKHFIDSLRD EVRIIRRLPK RYSKKYGFKL
201: FEMPPVSWSN DKYYLQQVLP RFSKRKVIHF VRSDTRLANN GLSLDLQRLR CRVNFQGLRF TPRIEALGSK LVRILQQRGS FVALHLRYEM DMLAFSGCTH
301: GCTDEEAEEL KKMRYAYPWW REKEIVSEER RVQGLCPLTP EEAVLVLKAL GFQKDTQIYI AAGEIFGGAK RLALLKESFP RIVKKEMLLD PTELQQFQNH
401: SSQMAALDFI VSVASNTFIP TYYGNMAKVV EGHRRYLGFK KTILLDRKRL VELLDLHNNK TLSWDQFAVA VKDAHQGRRM GEPTHRKVIS VRPKEEDYFY
501: ANPQECIS
101: NQMRAAICDM VTVARLLNLT LVVPELDKKS FWADTRYMFV SHVNDPTRFV CSLKHSFVSS FYSDFEDIFD IKHFIDSLRD EVRIIRRLPK RYSKKYGFKL
201: FEMPPVSWSN DKYYLQQVLP RFSKRKVIHF VRSDTRLANN GLSLDLQRLR CRVNFQGLRF TPRIEALGSK LVRILQQRGS FVALHLRYEM DMLAFSGCTH
301: GCTDEEAEEL KKMRYAYPWW REKEIVSEER RVQGLCPLTP EEAVLVLKAL GFQKDTQIYI AAGEIFGGAK RLALLKESFP RIVKKEMLLD PTELQQFQNH
401: SSQMAALDFI VSVASNTFIP TYYGNMAKVV EGHRRYLGFK KTILLDRKRL VELLDLHNNK TLSWDQFAVA VKDAHQGRRM GEPTHRKVIS VRPKEEDYFY
501: ANPQECIS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.