Factsheet for AT4G38390.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, plasma membrane
Any Predictor:	endoplasmic reticulum, nucleus, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69289	Canola	cytosol	59.71	83.08
Bra033562.1-P	Field mustard	golgi	82.94	82.94
CDY54803	Canola	golgi	82.94	82.79
CDY64279	Canola	golgi	82.4	82.25
GSMUA_Achr8P13270_001	Banana	endoplasmic reticulum, golgi, plasma membrane	48.28	60.05
VIT_03s0038g03240.t01	Wine grape	mitochondrion	63.34	58.95
GSMUA_Achr3P14740_001	Banana	mitochondrion	55.54	58.62
PGSC0003DMT400048017	Potato	golgi	57.17	57.8
Solyc01g112070.2.1	Tomato	nucleus	56.26	57.2
KRH74090	Soybean	endoplasmic reticulum, golgi, plasma membrane	57.53	56.81
Os04t0563000-01	Rice	endoplasmic reticulum, golgi	56.81	56.7
KRH14026	Soybean	golgi	57.71	56.08
AT1G20550.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	57.35	56.03
AT1G76270.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	57.89	55.77
TraesCS2D01G401900.1	Wheat	golgi	55.9	53.75
TraesCS2B01G423100.1	Wheat	golgi	55.72	53.67
GSMUA_Achr5P19070_001	Banana	endoplasmic reticulum, golgi, plasma membrane	59.17	53.62
KXG26900	Sorghum	golgi	56.26	53.54
EES15207	Sorghum	golgi	55.72	53.02
PGSC0003DMT400043331	Potato	extracellular	51.91	52.77
Zm00001d002668_P004	Maize	golgi	55.72	52.75
TraesCS5B01G348700.1	Wheat	golgi	55.35	52.59
Zm00001d050483_P002	Maize	golgi	55.17	52.5
HORVU5Hr1G086560.1	Barley	golgi	55.17	52.5
Os08t0554050-01	Rice	golgi	56.81	52.43
HORVU2Hr1G096100.42	Barley	mitochondrion, plastid	54.81	52.07
TraesCS5D01G353700.1	Wheat	golgi	54.81	52.07
TraesCS7D01G276100.1	Wheat	golgi	56.62	52.0
TraesCS5A01G347600.2	Wheat	golgi	55.17	51.88
TraesCS7B01G174000.1	Wheat	golgi	56.26	51.32
TraesCS7A01G276200.2	Wheat	golgi	55.9	51.16
Zm00001d021448_P002	Maize	mitochondrion	54.63	50.67
OQU89872	Sorghum	endoplasmic reticulum, golgi, plasma membrane	54.63	50.59
TraesCS2A01G405000.3	Wheat	golgi	56.44	49.68
Solyc10g074490.1.1	Tomato	golgi	57.17	48.84
AT4G16650.2	Thale cress	mitochondrion, plastid	48.46	48.63
HORVU7Hr1G058080.1	Barley	plastid	55.9	47.46
AT2G03280.2	Thale cress	cytosol, endoplasmic reticulum, golgi	32.49	35.24
AT1G14020.1	Thale cress	cytosol, endoplasmic reticulum, golgi	31.76	35.07
AT5G15740.1	Thale cress	golgi	32.12	34.84
AT3G02250.1	Thale cress	golgi	31.94	34.38
AT5G64600.1	Thale cress	mitochondrion	31.58	33.33
AT1G22460.1	Thale cress	golgi	32.12	31.33
AT2G37980.1	Thale cress	plastid	31.58	27.27
AT3G54100.1	Thale cress	cytosol	31.03	26.8
AT5G35570.1	Thale cress	cytosol, plastid	31.4	26.53
AT5G01100.1	Thale cress	plastid	29.95	26.15

Protein Annotations

MapMan:35.1	EntrezGene:829996	UniProt:A0A178V2M6	ProteinID:AEE86922.1	ArrayExpress:AT4G38390	EnsemblPlantsGene:AT4G38390
RefSeq:AT4G38390	TAIR:AT4G38390	RefSeq:AT4G38390-TAIR-G	EnsemblPlants:AT4G38390.1	TAIR:AT4G38390.1	Unigene:At.31174
ProteinID:CAB37495.1	ProteinID:CAB80504.1	InterPro:FucosylTrfase_pln	InterPro:GDP-Fuc_O-FucTrfase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005975	GO:GO:0006004	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016757	GO:GO:0019538	EMBL:KY906080	RefSeq:NP_195552.1	ProteinID:OAO99302.1	PFAM:PF10250
PIRSF:PIRSF009360	PO:PO:0000256	PO:PO:0007616	PO:PO:0009046	PO:PO:0025195	PANTHER:PTHR31818
PANTHER:PTHR31818:SF0	UniProt:Q9SVE6	Symbol:RHS17	TMHMM:TMhelix	UniParc:UPI00000AB120	SEG:seg

Description

RHS17RHS17 [Source:UniProtKB/TrEMBL;Acc:A0A178V2M6]

Coordinates

chr4:+:17975776..17978380

Molecular Weight (calculated)

62875.8 Da

IEP (calculated)

10.068

GRAVY (calculated)

-0.465

Length

551 amino acids

Sequence
(BLAST)

001: MASLKLKKRD NGAEPDKKKL VIAGIRHQLL LLLRRRHRLF PLVSAVSGCL LLILFSFSTL SPPPLIHHNN QVAVEPNPTT PFRVPENGGR SDRQLWSSRL
101: SNLYYACSNA TDTFQVTDTR SQTNRYLLIA TSGGLNQQRT GIIDAVVAAY ILNATLVVPK LDQKSYWKDT SNFEDIFDVD WFISHLSKDV KIIKELPKEE
201: QSRISTSLQS MRVPRKCTPS CYLQRVLPIL TKKHVVQLSK FDYRLSNALD TELQKLRCRV NYHAVRYTES INRMGQLLVD RMRKKAKHFV ALHLRFEPDM
301: LAFSGCYYGG GQKERLELGA MRRRWKTLHA ANPEKVRRHG RCPLTPEEIG LMLRGLGFGK EVHLYVASGE VYGGEDTLAP LRALFPNLHT KETLTSKKEL
401: APFANFSSRM AALDFIVCDK SDAFVTNNNG NMARILAGRR RYLGHKVTIR PNAKKLYEIF KNRHNMTWGE FSSKVRRYQT GFMGEPDEMK PGEGEFHENP
501: ASCICRTSEA RVKEKAKHVN EDDSSEYSEI GNVPISSRSD LDHSQFDEVI F

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.