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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plasma membrane, endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • plastid 2
  • golgi 3
  • mitochondrion 2
  • extracellular 1
  • plasma membrane 2
  • endoplasmic reticulum 2
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, plasma membrane
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:golgi
Plant-mPloc:golgi, plastid
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d021448_P002 Maize mitochondrion 93.61 93.77
HORVU5Hr1G086560.1 Barley golgi 74.45 76.51
TraesCS5D01G353700.1 Wheat golgi 73.95 75.86
TraesCS5B01G348700.1 Wheat golgi 73.61 75.52
TraesCS5A01G347600.2 Wheat golgi 74.12 75.26
EES15207 Sorghum golgi 69.08 70.98
GSMUA_Achr3P14740_001 Banana mitochondrion 54.79 62.45
KRH60950 Soybean endoplasmic reticulum 57.65 59.86
CDY69289 Canola cytosol 39.83 59.85
KRH51625 Soybean golgi, mitochondrion, vacuole 57.14 59.13
VIT_18s0001g00100.t01 Wine grape endoplasmic reticulum, golgi, mitochondrion 56.81 58.99
KXG26900 Sorghum golgi 56.81 58.38
AT1G20550.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 54.79 57.8
VIT_03s0038g03240.t01 Wine grape mitochondrion 56.97 57.26
AT1G76270.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 54.62 56.82
CDY29524 Canola extracellular, golgi, plasma membrane 53.78 56.74
Bra025826.1-P Field mustard extracellular, golgi, plasma membrane 53.78 56.64
PGSC0003DMT400048017 Potato golgi 51.76 56.51
Solyc01g112070.2.1 Tomato nucleus 51.43 56.46
Bra015771.1-P Field mustard golgi 55.13 56.45
CDX87622 Canola nucleus 53.11 56.23
CDX73250 Canola golgi 54.79 56.11
CDY31477 Canola extracellular, golgi, plasma membrane 53.11 56.03
Solyc12g098400.1.1 Tomato unclear 50.25 55.99
PGSC0003DMT400011606 Potato golgi 49.75 55.53
PGSC0003DMT400075381 Potato golgi 55.29 55.48
KRH74090 Soybean endoplasmic reticulum, golgi, plasma membrane 51.93 55.38
KRH14026 Soybean golgi 52.6 55.2
Solyc12g094590.1.1 Tomato unclear 54.96 55.14
AT4G38390.1 Thale cress endoplasmic reticulum, nucleus, plasma membrane 50.59 54.63
Bra033562.1-P Field mustard golgi 49.41 53.36
CDY54803 Canola golgi 49.41 53.26
CDY64279 Canola golgi 49.24 53.08
EES12618 Sorghum plastid 43.36 51.6
PGSC0003DMT400043331 Potato extracellular 46.22 50.74
Solyc10g074490.1.1 Tomato golgi 50.08 46.2
EER92792 Sorghum endoplasmic reticulum, golgi 29.92 38.86
KXG31767 Sorghum mitochondrion 30.92 37.32
EER92325 Sorghum mitochondrion 31.09 37.0
EES15789 Sorghum mitochondrion 29.58 35.92
OQU87869 Sorghum mitochondrion 27.39 34.75
EER99050 Sorghum golgi, mitochondrion, plastid 28.91 34.54
OQU76069 Sorghum mitochondrion 30.92 34.2
OQU85485 Sorghum mitochondrion 28.57 34.07
EER89610 Sorghum plastid 28.91 33.53
KXG22127 Sorghum plastid 29.41 28.64
EER96805 Sorghum plastid 29.08 26.7
KXG26432 Sorghum nucleus, plastid 4.2 18.38
Protein Annotations
MapMan:35.1EntrezGene:8067451UniProt:A0A1W0W670InterPro:FucosylTrfase_plnInterPro:GDP-Fuc_O-FucTrfaseGO:GO:0003674
GO:GO:0003824GO:GO:0005575GO:GO:0005975GO:GO:0006004GO:GO:0008150GO:GO:0008152
GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0016757EnsemblPlants:OQU89872ProteinID:OQU89872
ProteinID:OQU89872.1PFAM:PF10250PANTHER:PTHR31818PANTHER:PTHR31818:SF2EnsemblPlantsGene:SORBI_3002G286632TMHMM:TMhelix
UniParc:UPI0001A83A0BRefSeq:XP_002460613.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:+:66634506..66639374
Molecular Weight (calculated)
67202.2 Da
IEP (calculated)
9.272
GRAVY (calculated)
-0.545
Length
595 amino acids
Sequence
(BLAST)
001: MGQPRRRGYP HGHGRHHRCP RRIALPAAGL GLLFLAVSLL SVSLLSAPPL ADPRTGLGTS SSSRRFLRRY PTNGSGGELE GSESGDAFSV TTHGWTGQDD
101: LWRSKLASNF HRCSNSSNKF LDSGVTTQPD RYLIVVTSGG LNQQRTGIVD AVVAARILNA TLVVPRLDQT SFWKDSSNFS EIFDMDWFIS YLEKDVRIIK
201: EPPEKGGKAM KPYKMRVPRK CTPRCYLNRV LPALLKKHVI RMTKYDYRLS NKLDTDLQKL RCRVNYHALR FTDPIQELAE KLIQRMREKS RYFIALHLRF
301: EPDMLAFSGC YYGGGEKERR ELASIRKRWR TLHIRDPEKG RRQGRCPLTP EEVGLMLRAL GYRSDVYIYV ASGEIYGGED TLAPLKALFP NFHTKETLSS
401: QEELAPFLKF SSRMAAIDFI VCDESDAFVA NNIGNMAKIL AGQRRYFGHK RTIRPNAKQL YPLFMKRGNM SWDAFASQVR TIQKGYMGEP MEITPGRGEF
501: HANPAACICE KSGRNSVIVK SISGSTQEPV TDTRIRKAID IGRPPYPVYT DEEADGSDTE EDPDSSGRGE VIDTEPDDDS VVRQEDPELE EILSD
Best Arabidopsis Sequence Match ( AT1G20550.1 )
(BLAST)
001: MAFQRRRNNY YNRLRRLLPF ICAVSGALLI LFALLSILSP PPDDSDRRIS KHINYGANDE KKNTPVVFTV PRGGGRSDRD IWRSWNAEFF YGCCNASSKF
101: PNAKAITRND RYLAIATSGG LNQQRTGIVD AVVAARILNA TLVIPKLDQK SYWKDASDFS NIFDVDWFMS FLSKDVKIIE KLPQKGGQTW SPRRMRVPRK
201: CNEKCYINRV LPVLQKRHAV QLNKFDYRLS NKLRDDLQKL RCRVNYHALK FTDPILEMGN ELVRRMRKRS KHFIALHLRF EPDMLAFSGC YYGGGEKEKK
301: ELGTIRRRWK TLHVNNPEKQ RRQGRCPLTP EEVGLMLRAL GYGSDVHIYV ASGEVYGGEK SLAPLKALFP HFYSKDTIAT KMELKPFSSY SSRMAALDFL
401: VCDESDVFVT NNNGNMARIL AGRRRYFGHK PTIRPNAKKL YKLFMSKENT TWEEFASRVR TFQKGFMGEP KEVRAGKGEF HENPAACICE DTDAKVKAGK
501: MDSRKFGKKE QKEDEDAELS SSETDYEEDQ TDLQDRGLYN GTRLDYDDAL SVSEEPELEE MLSD
Arabidopsis Description
OFUT6O-fucosyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:F4HSU3]
SUBAcon: [golgi,plasma membrane,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.