CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016908_P006	Maize	nucleus, plastid	100.0	100.0
TraesCS7D01G158900.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7B01G341600.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7A01G158300.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7A01G067800.1	Wheat	nucleus, plastid	100.0	100.0
Solyc11g010230.1.1	Tomato	nucleus	100.0	100.0
HORVU7Hr1G100690.1	Barley	nucleus, plastid	100.0	100.0
KRG97549	Soybean	nucleus, plastid	100.0	100.0
Solyc04g074580.1.1	Tomato	nucleus, plastid	100.0	100.0
PGSC0003DMT400079216	Potato	nucleus, plastid	100.0	100.0
Bra003745.1-P	Field mustard	nucleus, plastid	100.0	100.0
EES15789	Sorghum	mitochondrion	29.41	8.16
EER92792	Sorghum	endoplasmic reticulum, golgi	27.21	8.08
OQU87869	Sorghum	mitochondrion	26.47	7.68
KXG31767	Sorghum	mitochondrion	25.74	7.1
OQU85485	Sorghum	mitochondrion	25.74	7.01
EER99050	Sorghum	golgi, mitochondrion, plastid	25.0	6.83
EER89610	Sorghum	plastid	25.74	6.82
EER92325	Sorghum	mitochondrion	24.26	6.6
OQU76069	Sorghum	mitochondrion	25.74	6.51
EES12618	Sorghum	plastid	21.32	5.8
KXG22127	Sorghum	plastid	25.0	5.56
KXG26900	Sorghum	golgi	22.06	5.18
EES15207	Sorghum	golgi	22.06	5.18
EER96805	Sorghum	plastid	23.53	4.94
OQU89872	Sorghum	endoplasmic reticulum, golgi, plasma membrane	18.38	4.2

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.4	EntrezGene:8068386	EntrezGene:8077114	UniProt:C5WXQ0	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0031492	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H3/CENP-A	InterPro:IPR009072	ProteinID:KXG26431.1	EnsemblPlants:KXG26432	ProteinID:KXG26432
ProteinID:KXG26432.1	PFAM:PF00125	PRINTS:PR00622	ScanProsite:PS00322	ScanProsite:PS00959	PANTHER:PTHR11426
PANTHER:PTHR11426:SF163	SMART:SM00428	EnsemblPlantsGene:SORBI_3006G100600	SUPFAM:SSF47113	unigene:Sbi.10072	unigene:Sbi.18084
UniParc:UPI0000000067	RefSeq:XP_002437756.1	RefSeq:XP_002467760.1	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:47098331..47100912

Molecular Weight (calculated)

15407.0 Da

IEP (calculated)

11.739

GRAVY (calculated)

-0.602

Length

136 amino acids

Sequence
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Best Arabidopsis Sequence Match ( AT4G40040.1 )
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Arabidopsis Description

HTR8Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.