Factsheet for Bra003745.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G158300.1	Wheat	nucleus, plastid	100.0	100.0
HORVU7Hr1G100690.1	Barley	nucleus, plastid	100.0	100.0
KRG97549	Soybean	nucleus, plastid	100.0	100.0
KXG26432	Sorghum	nucleus, plastid	100.0	100.0
PGSC0003DMT400079216	Potato	nucleus, plastid	100.0	100.0
Solyc04g074580.1.1	Tomato	nucleus, plastid	100.0	100.0
Solyc11g010230.1.1	Tomato	nucleus	100.0	100.0
TraesCS7B01G341600.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7D01G158900.1	Wheat	nucleus, plastid	100.0	100.0
Zm00001d036036_P001	Maize	plastid	100.0	100.0
Zm00001d045475_P001	Maize	nucleus, plastid	100.0	100.0
Bra037783.1-P	Field mustard	mitochondrion	30.15	8.07
Bra006319.1-P	Field mustard	golgi	24.26	6.5
Bra008679.1-P	Field mustard	golgi	24.26	6.48
Bra016714.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	23.53	6.43
Bra021472.1-P	Field mustard	mitochondrion	22.06	6.42
Bra001038.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, mitochondrion	24.26	6.42
Bra039166.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, mitochondrion	22.79	6.03
Bra007045.1-P	Field mustard	plastid	27.21	5.74
Bra025826.1-P	Field mustard	extracellular, golgi, plasma membrane	23.53	5.66
Bra000033.1-P	Field mustard	plastid	25.74	5.58
Bra015771.1-P	Field mustard	golgi	23.53	5.51
Bra033562.1-P	Field mustard	golgi	22.06	5.44
Bra012697.1-P	Field mustard	endoplasmic reticulum	18.38	4.93
Bra040745.1-P	Field mustard	mitochondrion	19.12	4.91
Bra017145.1-P	Field mustard	plastid	25.74	4.87
Bra035396.1-P	Field mustard	nucleus, plastid	22.79	4.85
Bra009626.1-P	Field mustard	plastid	22.79	4.78
Bra028889.1-P	Field mustard	plastid	22.06	4.75
Bra017390.1-P	Field mustard	nucleus	23.53	4.7
Bra038495.1-P	Field mustard	plastid	18.38	4.55
Bra000032.1-P	Field mustard	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.4	EnsemblPlantsGene:Bra003745	EnsemblPlants:Bra003745.1	EnsemblPlants:Bra003745.1-P	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H3/CENP-A	InterPro:IPR009072	UniProt:M4CHR2	PFAM:PF00125	PRINTS:PR00622
ScanProsite:PS00322	ScanProsite:PS00959	PANTHER:PTHR11426	PANTHER:PTHR11426:SF163	SMART:SM00428	SUPFAM:SSF47113
UniParc:UPI0000000067	:	:	:	:	:

Description

AT4G40030 (E=4e-072) | histone H3.2

Coordinates

chrA07:-:14820082..14820750

Molecular Weight (calculated)

15407.0 Da

IEP (calculated)

11.739

GRAVY (calculated)

-0.602

Length

136 amino acids

Sequence
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Best Arabidopsis Sequence Match ( AT4G40040.1 )
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Arabidopsis Description

HTR8Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.