CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G100690.1	Barley	nucleus, plastid	100.0	100.0
Zm00001d016908_P006	Maize	nucleus, plastid	100.0	100.0
TraesCS7D01G158900.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7B01G341600.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7A01G158300.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7A01G067800.1	Wheat	nucleus, plastid	100.0	100.0
Solyc11g010230.1.1	Tomato	nucleus	100.0	100.0
Solyc04g074580.1.1	Tomato	nucleus, plastid	100.0	100.0
PGSC0003DMT400079216	Potato	nucleus, plastid	100.0	100.0
KXG26432	Sorghum	nucleus, plastid	100.0	100.0
KRH31323	Soybean	nucleus	100.0	100.0
KRH17395	Soybean	nucleus, plastid	100.0	100.0
Bra003745.1-P	Field mustard	nucleus, plastid	100.0	100.0
KRH03183	Soybean	cytosol	25.74	9.56
KRH45128	Soybean	golgi	27.94	7.62
KRH01414	Soybean	golgi	27.94	7.52
KRG93722	Soybean	cytosol	27.94	7.38
KRH63160	Soybean	cytosol	27.94	7.27
KRH54757	Soybean	cytosol	27.94	7.22
KRH64055	Soybean	golgi, mitochondrion	26.47	7.07
KRH53889	Soybean	mitochondrion, plastid	26.47	7.06
KRH56756	Soybean	golgi, peroxisome, plastid	26.47	6.99
KRG89556	Soybean	mitochondrion, plastid	18.38	6.94
KRH15012	Soybean	cytosol	26.47	6.87
KRH65987	Soybean	cytosol	24.26	6.73
KRH73118	Soybean	mitochondrion	25.74	6.68
KRH16780	Soybean	endoplasmic reticulum, golgi, plasma membrane	25.74	6.67
KRH72392	Soybean	endoplasmic reticulum, golgi, plasma membrane	25.0	6.61
KRH75161	Soybean	cytosol	25.0	6.53
KRH53019	Soybean	golgi	25.74	6.49
KRH70785	Soybean	cytosol, nucleus, vacuole	23.53	6.32
KRH62305	Soybean	cytosol, golgi, mitochondrion, plasma membrane, plastid	25.0	6.32
KRH74924	Soybean	cytosol	22.79	6.13
KRH71003	Soybean	golgi	22.06	6.09
KRH50557	Soybean	cytosol	20.59	5.61
KRH75793	Soybean	plastid	25.74	5.48
KRH60950	Soybean	endoplasmic reticulum	22.79	5.41
KRH12531	Soybean	plastid	23.53	5.36
KRH51625	Soybean	golgi, mitochondrion, vacuole	22.06	5.22
KRH74090	Soybean	endoplasmic reticulum, golgi, plasma membrane	21.32	5.2
KRH14026	Soybean	golgi	21.32	5.11
KRH19306	Soybean	nucleus, plastid	23.53	5.11
KRH02613	Soybean	nucleus	22.79	4.94
KRH04145	Soybean	golgi, mitochondrion, plastid	19.85	4.93
KRH77356	Soybean	plastid	19.85	4.92
KRH28091	Soybean	plastid	19.85	4.88
KRH57421	Soybean	mitochondrion, plasma membrane, plastid, vacuole	19.85	4.41

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100305466	EntrezGene:100783845	EntrezGene:100785082	EntrezGene:100788696	EntrezGene:100809785
MapMan:12.1.4	EMBL:ACUP02007137	EMBL:ACUP02009087	EMBL:ACUP02010800	EMBL:BT089058	UniProt:C6SV66
EnsemblPlantsGene:GLYMA_18G015300	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0005730	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0010369
GO:GO:0016043	GO:GO:0030875	GO:GO:0031492	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H3/CENP-A	InterPro:IPR009072	EnsemblPlants:KRG97549	ProteinID:KRG97549	ProteinID:KRG97549.1	ProteinID:KRH17395.1
ProteinID:KRH31323.1	PFAM:PF00125	PRINTS:PR00622	ScanProsite:PS00322	ScanProsite:PS00959	PANTHER:PTHR11426
PANTHER:PTHR11426:SF163	SMART:SM00428	SUPFAM:SSF47113	UniParc:UPI0000000067	:	:

Description

hypothetical protein

Coordinates

chr18:+:1093880..1095639

Molecular Weight (calculated)

15407.0 Da

IEP (calculated)

11.739

GRAVY (calculated)

-0.602

Length

136 amino acids

Sequence
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Best Arabidopsis Sequence Match ( AT4G40040.1 )
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Arabidopsis Description

HTR8Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.