CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19306	Soybean	nucleus, plastid	95.38	95.69
KRH12531	Soybean	plastid	74.68	78.56
VIT_11s0016g01190.t01	Wine grape	cytosol, plastid	75.32	74.61
Solyc07g041750.2.1	Tomato	plastid	71.5	69.5
AT5G35570.1	Thale cress	cytosol, plastid	71.97	69.33
CDY33687	Canola	nucleus, plastid	70.7	69.05
Bra035396.1-P	Field mustard	nucleus, plastid	70.22	69.01
CDX74650	Canola	nucleus, plastid	70.22	69.01
GSMUA_Achr9P16090_001	Banana	nucleus, peroxisome, plasma membrane	61.94	63.98
TraesCS5D01G215300.3	Wheat	nucleus, plasma membrane, plastid	61.31	61.21
EER96805	Sorghum	plastid	62.74	60.8
TraesCS5B01G207300.2	Wheat	cytosol, plasma membrane, plastid	60.83	60.44
TraesCS5A01G209100.1	Wheat	plastid	60.83	60.35
Os09t0442900-01	Rice	cytosol, plasma membrane, plastid	61.15	60.19
HORVU5Hr1G061540.6	Barley	nucleus, plasma membrane, plastid	60.83	59.97
KRH65987	Soybean	cytosol	44.59	57.14
KRH15012	Soybean	cytosol	42.36	50.76
KRH73118	Soybean	mitochondrion	41.4	49.62
KRH75793	Soybean	plastid	48.73	47.89
Zm00001d020643_P002	Maize	plasma membrane, plastid	54.78	44.73
KRH03183	Soybean	cytosol	25.0	42.9
KRH74924	Soybean	cytosol	33.44	41.5
KRG89556	Soybean	mitochondrion, plastid	23.73	41.39
KRH45128	Soybean	golgi	32.8	41.28
KRH70785	Soybean	cytosol, nucleus, vacuole	33.12	41.11
KRH72392	Soybean	endoplasmic reticulum, golgi, plasma membrane	33.6	41.05
KRH01414	Soybean	golgi	32.64	40.59
KRH16780	Soybean	endoplasmic reticulum, golgi, plasma membrane	33.92	40.57
KRH50557	Soybean	cytosol	31.85	40.08
KRH53889	Soybean	mitochondrion, plastid	32.17	39.61
KRG93722	Soybean	cytosol	32.32	39.42
KRH64055	Soybean	golgi, mitochondrion	31.69	39.1
KRH71003	Soybean	golgi	30.57	38.95
KRH63160	Soybean	cytosol	32.17	38.62
KRH54757	Soybean	cytosol	32.17	38.4
KRH56756	Soybean	golgi, peroxisome, plastid	31.37	38.25
KRH62305	Soybean	cytosol, golgi, mitochondrion, plasma membrane, plastid	32.64	38.1
KRH53019	Soybean	golgi	32.32	37.66
KRH75161	Soybean	cytosol	30.41	36.66
KRH04145	Soybean	golgi, mitochondrion, plastid	28.5	32.66
KRH77356	Soybean	plastid	28.18	32.24
KRH28091	Soybean	plastid	28.18	32.01
KRH74090	Soybean	endoplasmic reticulum, golgi, plasma membrane	26.11	29.39
KRH60950	Soybean	endoplasmic reticulum	26.59	29.14
KRH14026	Soybean	golgi	26.27	29.1
KRH57421	Soybean	mitochondrion, plasma membrane, plastid, vacuole	28.18	28.92
KRH51625	Soybean	golgi, mitochondrion, vacuole	26.43	28.87
KRH31323	Soybean	nucleus	4.94	22.79
KRG97549	Soybean	nucleus, plastid	4.94	22.79
KRH17395	Soybean	nucleus, plastid	4.94	22.79

Protein Annotations

EntrezGene:100801100	Gene3D:3.40.50.11350	MapMan:35.1	EMBL:ACUP02010312	InterPro:FucosylTrfase_pln	InterPro:GDP-Fuc_O-FucTrfase
EnsemblPlantsGene:GLYMA_17G049700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006004	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	UniProt:I1MSB0	EnsemblPlants:KRH02613	ProteinID:KRH02613
ProteinID:KRH02613.1	PFAM:PF10250	PIRSF:PIRSF009360	PANTHER:PTHR31741	PANTHER:PTHR31741:SF8	TMHMM:TMhelix
UniParc:UPI000233DF74	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:3775263..3781370

Molecular Weight (calculated)

70655.2 Da

IEP (calculated)

8.627

GRAVY (calculated)

-0.499

Length

628 amino acids

Sequence
(BLAST)

001: MAIFSESNHH HNTSDGVSQR VNSPRFSGPM TRRAHSFKRN NSSNNSNNTA TTTSHGGGGG SGGVEIELQI NSPRSEEASE GVPVGKHSHH HVTQRVHVRG
101: LLKKPLASIV EDLGLRERKK IGHWMFLVFC GVCLFMGVLK ICATGWLGSA IEITQSNKEL SDSIPSLTLM DKSSLGYAYR GGASDVERTL KTVATGVDGS
201: HTAMTEDSGI WSKPNSDNFT KCIDLPSNHK KLDAKTNGYI FVNANGGLNQ MRFGICDMVA VAKIVKATLV LPSLDHTSYW ADDSGFKDLF DWKHFINMLK
301: DDVHIVEKLP PAYAGIEPFP KTPISWSKVH YYKTEVLPLL KQHKVMYFTH TDSRLDNNDI PRSIQKLRCR VNYRALKYSA PIEELGNTLV SRMQQNGNPY
401: LALHLRYEKD MLAFTGCSHN LTAEEDEEMR QMRYEVSHWK EKEINGTERR LLGGCPLTPR ETSLLLRALG FPSHTRIFLV AGEAYGRGSM KYLEDDFPNI
501: FSHSSLSSEE ELNPFKNHQN MLAGLDYVVA LKSDVFLYTY DGNMAKAVQG HRRFEDFKKT INPDKMNFVK LVDQLDEGKI SWKKFSSKVK KLHTDRIGAP
601: YPREPGEFPK LEESFYANPL PGCICETR

Best Arabidopsis Sequence Match ( AT5G35570.1 )
(BLAST)

001: MGHHHDGGDG VPQHHVNSPR FSGPMTRRAQ SFKRGGSAGS SSNNNNTHVG VSGGDGNNNN NTSSTLRVHH EIDLPLNSPR SEIVSGSSGS DPSGGFDSAL
101: NRKHQTYGQL RERVVKGLLR KPMGSVVSDF SLRERKKLGH WMFFAFCGVC LFLGVFKICA TGWLGSAIDG AASDQDLSIP RVNLLDHSSH DYIYKDGGND
201: VDPTLVMVAS DVVGDQNSVV EFSGVWAKPE SGNFSRCIDS SRSRKKLGAN TNGYLLINAN GGLNQMRFGI CDMVAVAKIM KATLVLPSLD HSSYWADDSG
301: FKDLFDWQHF IEELKDDIHI VEMLPSELAG IEPFVKTPIS WSKVGYYKKE VLPLLKQHIV MYLTHTDSRL ANNDLPDSVQ KLRCRVNYRA LKYSAPIEEL
401: GNVLVSRMRQ DRGPYLALHL RYEKDMLAFT GCSHSLTAEE DEELRQMRYE VSHWKEKEIN GTERRLQGGC PLTPRETSLL LRALEFPSSS RIYLVAGEAY
501: GNGSMDPLNT DFPNIFSHSI LATKEELSPF NNHQNMLAGL DYIVALQSEV FLYTYDGNMA KAVQGHRRFE DFKKTINPDK MNFVKLVDAL DEGRISWKKF
601: SSKVKKLHKD RNGAPYNRES GEFPKLEESF YANPLPGCIC ENTEEEGLMR RT

Arabidopsis Description

OFUT35O-fucosyltransferase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q94BY4]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.