Factsheet for Solyc11g010230.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G100690.1	Barley	nucleus, plastid	100.0	100.0
Zm00001d045475_P001	Maize	nucleus, plastid	100.0	100.0
Zm00001d036036_P001	Maize	plastid	100.0	100.0
TraesCS7D01G158900.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7B01G341600.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7A01G158300.1	Wheat	nucleus, plastid	100.0	100.0
Solyc05g051500.2.1	Tomato	nucleus, plastid	100.0	100.0
Solyc04g081150.2.1	Tomato	nucleus, plastid	100.0	100.0
Solyc04g074580.1.1	Tomato	nucleus, plastid	100.0	100.0
Bra003745.1-P	Field mustard	nucleus, plastid	100.0	100.0
KRG97549	Soybean	nucleus, plastid	100.0	100.0
KXG26432	Sorghum	nucleus, plastid	100.0	100.0
PGSC0003DMT400079216	Potato	nucleus, plastid	100.0	100.0
Solyc11g005870.1.1	Tomato	mitochondrion	30.88	8.52
Solyc06g069380.2.1	Tomato	mitochondrion	28.68	7.89
Solyc12g038670.1.1	Tomato	cytosol	27.21	7.25
Solyc03g114730.2.1	Tomato	cytosol	26.47	7.21
Solyc04g074670.2.1	Tomato	mitochondrion	26.47	6.73
Solyc03g096370.2.1	Tomato	golgi, mitochondrion, nucleus	25.0	6.45
Solyc05g013140.2.1	Tomato	cytosol, endoplasmic reticulum, golgi	22.79	6.16
Solyc10g085050.1.1	Tomato	cytosol	25.0	5.64
Solyc12g098400.1.1	Tomato	unclear	22.06	5.62
Solyc01g010930.2.1	Tomato	cytosol, extracellular	11.03	5.62
Solyc06g060750.2.1	Tomato	mitochondrion	22.06	5.56
Solyc12g094590.1.1	Tomato	unclear	22.79	5.23
Solyc01g112070.2.1	Tomato	nucleus	19.85	4.98
Solyc09g011860.2.1	Tomato	plastid	23.53	4.97
Solyc07g041750.2.1	Tomato	plastid	23.53	4.95
Solyc10g074490.1.1	Tomato	golgi	21.32	4.5
Solyc08g078540.2.1	Tomato	mitochondrion, plastid	19.12	4.39

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.4	EMBL:EF661028	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031492	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H3/CENP-A
InterPro:IPR009072	PFAM:PF00125	PRINTS:PR00622	ScanProsite:PS00322	ScanProsite:PS00959	PANTHER:PTHR11426
PANTHER:PTHR11426:SF163	UniProt:Q6LB28	SMART:SM00428	SUPFAM:SSF47113	EnsemblPlantsGene:Solyc11g010230.1	EnsemblPlants:Solyc11g010230.1.1
UniParc:UPI0000000067	EMBL:X83422	:	:	:	:

Description

Histone H3.3 [Source:Projected from Arabidopsis thaliana (AT5G10980) UniProtKB/Swiss-Prot;Acc:P59169]

Coordinates

chr11:-:3290641..3291380

Molecular Weight (calculated)

15407.0 Da

IEP (calculated)

11.739

GRAVY (calculated)

-0.602

Length

136 amino acids

Sequence
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Best Arabidopsis Sequence Match ( AT4G40040.1 )
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Arabidopsis Description

HTR8Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.