Factsheet for Bra000032.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017145.1-P	Field mustard	plastid	64.1	6.96
Bra000033.1-P	Field mustard	plastid	10.26	1.28
Bra007045.1-P	Field mustard	plastid	10.26	1.24
Bra028889.1-P	Field mustard	plastid	6.41	0.79
Bra040745.1-P	Field mustard	mitochondrion	5.13	0.76
Bra017390.1-P	Field mustard	nucleus	6.41	0.73
Bra038495.1-P	Field mustard	plastid	5.13	0.73
Bra035396.1-P	Field mustard	nucleus, plastid	5.13	0.63
Bra012697.1-P	Field mustard	endoplasmic reticulum	3.85	0.59
Bra009626.1-P	Field mustard	plastid	3.85	0.46
Bra016714.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	2.56	0.4
Bra037783.1-P	Field mustard	mitochondrion	2.56	0.39
Bra033562.1-P	Field mustard	golgi	2.56	0.36
Bra025826.1-P	Field mustard	extracellular, golgi, plasma membrane	2.56	0.35
Bra015771.1-P	Field mustard	golgi	2.56	0.34
Bra039166.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, mitochondrion	1.28	0.19
Bra008679.1-P	Field mustard	golgi	0.0	0.0
Bra006319.1-P	Field mustard	golgi	0.0	0.0
Bra021472.1-P	Field mustard	mitochondrion	0.0	0.0
Bra003745.1-P	Field mustard	nucleus, plastid	0.0	0.0
Bra001038.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:Bra000032.1	EnsemblPlants:Bra000032.1-P	EnsemblPlantsGene:Bra000032	InterPro:Yos1	PANTHER:PTHR15858	PANTHER:PTHR15858:SF2
PFAM:PF08571	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000254001D	UniProt:M4C754	MapMan:35.2

Description

AT2G37975 (E=1e-031) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yos1-like (InterPro:IPR013880); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54085.2); Has 146 Blast hits to 146 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 25; Plants - 26; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

Coordinates

chrA03:-:8919971..8920207

Molecular Weight (calculated)

8787.2 Da

IEP (calculated)

10.038

GRAVY (calculated)

0.618

Length

78 amino acids

Sequence
(BLAST)

1: MGFWTLMEGL LLFANALAIL NEDRFLAPKG WTLAELHQTG KRNSLKGQIV GLIHACQYMR LPLMLFNLIV IVVKLFSG

Best Arabidopsis Sequence Match ( AT2G37975.1 )
(BLAST)

1: MGFWTLMEGL LLFANALAIL NEDRFLAPKG WTLAELHQTG KRNSLKGQII GLIHACHYMR LPLMLFNLIV IVFKLFSG

Arabidopsis Description

At2g37975 [Source:UniProtKB/TrEMBL;Acc:Q8LG42]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.