CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029008_P001	Maize	mitochondrion	95.6	95.79
Os03t0328100-01	Rice	mitochondrion	84.8	85.14
TraesCS4A01G131200.2	Wheat	mitochondrion, plastid	83.4	83.73
TraesCS4B01G173400.1	Wheat	mitochondrion	83.2	83.53
TraesCS4D01G175500.2	Wheat	mitochondrion, plastid	83.0	83.33
HORVU4Hr1G051230.6	Barley	endoplasmic reticulum, golgi, mitochondrion	82.8	82.47
GSMUA_Achr5P27790_001	Banana	cytosol	63.0	75.0
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	62.4	71.4
KXG31767	Sorghum	mitochondrion	66.0	66.94
EER92792	Sorghum	endoplasmic reticulum, golgi	54.2	59.17
EER99050	Sorghum	golgi, mitochondrion, plastid	55.2	55.42
EER89610	Sorghum	plastid	56.0	54.58
OQU85485	Sorghum	mitochondrion	54.4	54.51
OQU87869	Sorghum	mitochondrion	38.8	41.36
EES15789	Sorghum	mitochondrion	40.4	41.22
OQU76069	Sorghum	mitochondrion	42.4	39.41
EES12618	Sorghum	plastid	35.4	35.4
KXG22127	Sorghum	plastid	40.2	32.9
EER96805	Sorghum	plastid	42.4	32.72
EES15207	Sorghum	golgi	37.8	32.64
OQU89872	Sorghum	endoplasmic reticulum, golgi, plasma membrane	37.0	31.09
KXG26900	Sorghum	golgi	36.0	31.09
KXG26432	Sorghum	nucleus, plastid	6.6	24.26

Protein Annotations

MapMan:21.3.2.1.1	EntrezGene:8084560	UniProt:C5X1P6	EnsemblPlants:EER92325	ProteinID:EER92325	ProteinID:EER92325.1
InterPro:FucosylTrfase_pln	InterPro:GDP-Fuc_O-FucTrfase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006004	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	PFAM:PF10250	PIRSF:PIRSF009360
PANTHER:PTHR31741	PANTHER:PTHR31741:SF22	EnsemblPlantsGene:SORBI_3001G385300	TMHMM:TMhelix	UniParc:UPI0001A82A3F	RefSeq:XP_002465327.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:67271562..67275599

Molecular Weight (calculated)

56802.0 Da

IEP (calculated)

9.909

GRAVY (calculated)

-0.330

Length

500 amino acids

Sequence
(BLAST)

001: MAKHKASPPA AVRRRIGGAG ASAIRWALRV ATSIVAWTLL LHLFTFLGIP RPPLPIARPS CLGGGRSSNS TAADSVVEAG HLAPPALPLP PRRLYKSNGY
101: LLVSCNGGLN QMRAAICDMV TVARYLNLTM VIPELDKQSF WADPSDFGDI FDVNHFIDSL RNEVKIVKEL PQKFSEKVPL SMQPISWSSE KYYLRQILPL
201: VRKHKVVRFS KTDSRLANNG LPLKLQKLRC HVNYNALRFT PSIEALGNKM ISTLRRTGSF IVLHLRYEMD MLAFSGCTHG CSDEETEELT RMRYAYPWWK
301: EKEIDSEKKR LEGLCPLTPG ETTFVLKALG FPRDTRIYIA SGEIYGGEKR LAVLKKEFPN IVRKETLLSD DELRPFQKHS TQMAALDYLV SVASDVFIPS
401: NDGNMAKVVE GHRRFTGFHR TIQLDRKKLV ELIDLFEDQE LTWEEFSVAV KELHGGRMSQ PTRRRIIPGQ PKEEDYFYAN PHECLGPAKK RRDRLKHMEI

Best Arabidopsis Sequence Match ( AT2G03280.1 )
(BLAST)

001: MSVVVGDRSE STLMRSDYKA PPSQAIPKAR LQVWFFRVCS CILVWTCLIQ LFWHSQIFTG LTNHISRFSL PVQSVPLPPP LPPRNYTSNG ILLVSCNGGL
101: NQMRAAICDM VTVARLLNLT LVVPELDKKS FWADTSDFED IFDIKHFIDS LRDEVRIIRR LPKRYSKKYG FKLFEMPPVS WSNDKYYLQQ VLPRFSKRKV
201: IHFVRSDTRL ANNGLSLDLQ RLRCRVNFQG LRFTPRIEAL GSKLVRILQQ RGSFVALHLR YEMDMLAFSG CTHGCTDEEA EELKKMRYAY PWWREKEIVS
301: EERRVQGLCP LTPEEAVLVL KALGFQKDTQ IYIAAGEIFG GAKRLALLKE SFPRIVKKEM LLDPTELQQF QNHSSQMAAL DFIVSVASNT FIPTYYGNMA
401: KVVEGHRRYL GFKKTILLDR KRLVELLDLH NNKTLSWDQF AVAVKDAHQG RRMGEPTHRK VISVRPKEED YFYANPQECI S

Arabidopsis Description

SUBAcon: [endoplasmic reticulum,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.